miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1352 5' -61.9 NC_001335.1 + 3390 0.66 0.371659
Target:  5'- uGUGUUCGCCGCcGGUCUCGaguucgaggaacaGCUCu -3'
miRNA:   3'- uCGCGGGUGGCGaCCAGAGCgg-----------UGAG- -5'
1352 5' -61.9 NC_001335.1 + 27572 0.66 0.351716
Target:  5'- -uCGCCCACUGCUGGUagaggaugUCGaagaACUCg -3'
miRNA:   3'- ucGCGGGUGGCGACCAg-------AGCgg--UGAG- -5'
1352 5' -61.9 NC_001335.1 + 46246 0.66 0.335685
Target:  5'- --aGCCCGCCaGCgcgUGGUUcaUCGCCGCg- -3'
miRNA:   3'- ucgCGGGUGG-CG---ACCAG--AGCGGUGag -5'
1352 5' -61.9 NC_001335.1 + 23769 0.67 0.290837
Target:  5'- gAGaCGCCgGaaGCUGGgcuaUCGUCACUCu -3'
miRNA:   3'- -UC-GCGGgUggCGACCag--AGCGGUGAG- -5'
1352 5' -61.9 NC_001335.1 + 657 0.67 0.283835
Target:  5'- gAGCGCCUucucgACCGCguaaagcaGGUCggCGCUgcACUCa -3'
miRNA:   3'- -UCGCGGG-----UGGCGa-------CCAGa-GCGG--UGAG- -5'
1352 5' -61.9 NC_001335.1 + 36739 0.68 0.26363
Target:  5'- cGC-CCCGgCGCUGGUCgaguaCGUCAgCUCg -3'
miRNA:   3'- uCGcGGGUgGCGACCAGa----GCGGU-GAG- -5'
1352 5' -61.9 NC_001335.1 + 14696 0.7 0.199427
Target:  5'- -aCGCCCACaagGCUGGagUUCGCCGCg- -3'
miRNA:   3'- ucGCGGGUGg--CGACCa-GAGCGGUGag -5'
1352 5' -61.9 NC_001335.1 + 9176 0.71 0.153315
Target:  5'- uGCGCgCCGCCGCgucGGUCaUCGaCCgaaGCUCg -3'
miRNA:   3'- uCGCG-GGUGGCGa--CCAG-AGC-GG---UGAG- -5'
1352 5' -61.9 NC_001335.1 + 9884 0.72 0.145336
Target:  5'- cGCGaUCACUGCgGGUCUUGCCACa- -3'
miRNA:   3'- uCGCgGGUGGCGaCCAGAGCGGUGag -5'
1352 5' -61.9 NC_001335.1 + 25543 0.72 0.130505
Target:  5'- cGuCGCCCGcuCCGCUGGUCagaggguguuuUCGCC-CUCu -3'
miRNA:   3'- uC-GCGGGU--GGCGACCAG-----------AGCGGuGAG- -5'
1352 5' -61.9 NC_001335.1 + 13461 1.09 0.000182
Target:  5'- gAGCGCCCACCGCUGGUCUCGCCACUCg -3'
miRNA:   3'- -UCGCGGGUGGCGACCAGAGCGGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.