miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13536 5' -41.5 NC_003436.1 + 27838 0.66 0.999189
Target:  5'- ----aAGGAUAUUACCAUaGCACugucACGa -3'
miRNA:   3'- aaaaaUUCUGUAGUGGUA-UGUGu---UGC- -5'
13536 5' -41.5 NC_003436.1 + 18835 0.67 0.996855
Target:  5'- ----cAAGACAUCACUAccCACuAACGu -3'
miRNA:   3'- aaaaaUUCUGUAGUGGUauGUG-UUGC- -5'
13536 5' -41.5 NC_003436.1 + 15665 0.68 0.994397
Target:  5'- ---aUAAGccaaaaACAUUACCAgcagaGCACAACGg -3'
miRNA:   3'- aaaaAUUC------UGUAGUGGUa----UGUGUUGC- -5'
13536 5' -41.5 NC_003436.1 + 17378 0.69 0.990578
Target:  5'- ------cGACuUUGCCAUGCGCAAUGu -3'
miRNA:   3'- aaaaauuCUGuAGUGGUAUGUGUUGC- -5'
13536 5' -41.5 NC_003436.1 + 19430 0.93 0.120645
Target:  5'- gUUUUUGAaACAUCACCAUACACAACGu -3'
miRNA:   3'- -AAAAAUUcUGUAGUGGUAUGUGUUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.