miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13539 3' -51.6 NC_003444.1 + 395 0.66 0.773685
Target:  5'- gGCGGUAuGGUCAaaaauccGGAGCUGaCCGCc -3'
miRNA:   3'- gUGUCGU-CUAGUguu----UCUCGAC-GGUG- -5'
13539 3' -51.6 NC_003444.1 + 9857 0.66 0.772599
Target:  5'- aCGCcaGGCGGAagaagcgUCACAGGGugGGCUGgCGCu -3'
miRNA:   3'- -GUG--UCGUCU-------AGUGUUUC--UCGACgGUG- -5'
13539 3' -51.6 NC_003444.1 + 16914 0.67 0.714118
Target:  5'- aACAGCAGcgCACGAAGcgcgguaagcagcuGGUcgUGCUGCg -3'
miRNA:   3'- gUGUCGUCuaGUGUUUC--------------UCG--ACGGUG- -5'
13539 3' -51.6 NC_003444.1 + 8051 0.67 0.682621
Target:  5'- cUACGGCuucgguGGggGCGAAGuGCUGCCAg -3'
miRNA:   3'- -GUGUCGu-----CUagUGUUUCuCGACGGUg -5'
13539 3' -51.6 NC_003444.1 + 5102 0.68 0.631722
Target:  5'- cCGCGGCAGucuguguugugccgGUCACu--GAuGCUGCCAg -3'
miRNA:   3'- -GUGUCGUC--------------UAGUGuuuCU-CGACGGUg -5'
13539 3' -51.6 NC_003444.1 + 16603 0.68 0.599699
Target:  5'- aCGCAGCgcGGaAUCACAGGGAuC-GCCACa -3'
miRNA:   3'- -GUGUCG--UC-UAGUGUUUCUcGaCGGUG- -5'
13539 3' -51.6 NC_003444.1 + 13931 0.69 0.583173
Target:  5'- cCACAGacCGGAUCaaagACAAucacccgcugguuGGGCUGCCACa -3'
miRNA:   3'- -GUGUC--GUCUAG----UGUUu------------CUCGACGGUG- -5'
13539 3' -51.6 NC_003444.1 + 29766 0.69 0.564401
Target:  5'- aCACGGCGGAagACAAcGcGCUGgCGCa -3'
miRNA:   3'- -GUGUCGUCUagUGUUuCuCGACgGUG- -5'
13539 3' -51.6 NC_003444.1 + 32167 0.7 0.49576
Target:  5'- gCACAGaCGGAUUGCGcccGGAGCgUGUCGCa -3'
miRNA:   3'- -GUGUC-GUCUAGUGUu--UCUCG-ACGGUG- -5'
13539 3' -51.6 NC_003444.1 + 16489 0.71 0.452154
Target:  5'- uUACuGGCAGGUCaACAugccAGCUGCCACc -3'
miRNA:   3'- -GUG-UCGUCUAG-UGUuuc-UCGACGGUG- -5'
13539 3' -51.6 NC_003444.1 + 36271 0.71 0.452154
Target:  5'- aACAGCAGAUCGCAcu--GgaGUCACa -3'
miRNA:   3'- gUGUCGUCUAGUGUuucuCgaCGGUG- -5'
13539 3' -51.6 NC_003444.1 + 325 0.73 0.361471
Target:  5'- gCACAGCAGGcccugacCGCAGAGuucuuuaguugucAGUUGCCACa -3'
miRNA:   3'- -GUGUCGUCUa------GUGUUUC-------------UCGACGGUG- -5'
13539 3' -51.6 NC_003444.1 + 878 1.11 0.00083
Target:  5'- gCACAGCAGAUCACAAAGAGCUGCCACg -3'
miRNA:   3'- -GUGUCGUCUAGUGUUUCUCGACGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.