miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1354 3' -50.5 NC_001335.1 + 19996 0.66 0.929487
Target:  5'- aCGGGAACGGCUUgacgauguuccGCCAAuuugcuGG-GUUGa -3'
miRNA:   3'- gGUCCUUGCUGAA-----------CGGUU------CCaCAACa -5'
1354 3' -50.5 NC_001335.1 + 15192 0.66 0.923531
Target:  5'- uCCAGGucuGCGACaucaucGCCAAGGcGUUc- -3'
miRNA:   3'- -GGUCCu--UGCUGaa----CGGUUCCaCAAca -5'
1354 3' -50.5 NC_001335.1 + 3634 0.67 0.889323
Target:  5'- cUCGGuGAGCGGCUUGCU--GGcGUUGa -3'
miRNA:   3'- -GGUC-CUUGCUGAACGGuuCCaCAACa -5'
1354 3' -50.5 NC_001335.1 + 22353 0.68 0.820384
Target:  5'- gUCuGGAugGugUUGUUGAcGGUGUUGa -3'
miRNA:   3'- -GGuCCUugCugAACGGUU-CCACAACa -5'
1354 3' -50.5 NC_001335.1 + 40946 0.68 0.820384
Target:  5'- aCGGGAuCGGCUUGUCGccGUcGUUGUg -3'
miRNA:   3'- gGUCCUuGCUGAACGGUucCA-CAACA- -5'
1354 3' -50.5 NC_001335.1 + 31922 0.69 0.770077
Target:  5'- gCCGGGGGCaGAUggUGCCAAGGUcg-GUc -3'
miRNA:   3'- -GGUCCUUG-CUGa-ACGGUUCCAcaaCA- -5'
1354 3' -50.5 NC_001335.1 + 48135 0.69 0.770077
Target:  5'- cCCAGGAACGGa--GCCuguGUGUUGg -3'
miRNA:   3'- -GGUCCUUGCUgaaCGGuucCACAACa -5'
1354 3' -50.5 NC_001335.1 + 12573 0.7 0.737957
Target:  5'- cUCAGGAGCGGuCUUgGUCuuGGUGUUGc -3'
miRNA:   3'- -GGUCCUUGCU-GAA-CGGuuCCACAACa -5'
1354 3' -50.5 NC_001335.1 + 50260 0.71 0.659586
Target:  5'- gCCcGGAcGCGACggccuucugUGCCAAGGUGUg-- -3'
miRNA:   3'- -GGuCCU-UGCUGa--------ACGGUUCCACAaca -5'
1354 3' -50.5 NC_001335.1 + 16197 1.11 0.002229
Target:  5'- cCCAGGAACGACUUGCCAAGGUGUUGUa -3'
miRNA:   3'- -GGUCCUUGCUGAACGGUUCCACAACA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.