miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13540 3' -57.1 NC_003444.1 + 6064 0.66 0.51889
Target:  5'- --aCCGGGUauuGAGGCU--CCACGCCa -3'
miRNA:   3'- cgcGGCCCGcu-UUCUGAagGGUGCGG- -5'
13540 3' -57.1 NC_003444.1 + 15157 0.66 0.497863
Target:  5'- uGCGCCGGaGCGugucgcuGACgUCCa--GCCu -3'
miRNA:   3'- -CGCGGCC-CGCuuu----CUGaAGGgugCGG- -5'
13540 3' -57.1 NC_003444.1 + 847 0.67 0.467067
Target:  5'- -gGCUGGGUcaauAAAGGC-UCCCggcuGCGCCg -3'
miRNA:   3'- cgCGGCCCGc---UUUCUGaAGGG----UGCGG- -5'
13540 3' -57.1 NC_003444.1 + 29753 0.67 0.457021
Target:  5'- uGUGCCGcguauuacacGGCGGAAGACaa--CGCGCUg -3'
miRNA:   3'- -CGCGGC----------CCGCUUUCUGaaggGUGCGG- -5'
13540 3' -57.1 NC_003444.1 + 11434 0.67 0.447091
Target:  5'- cCGCCGGau-AAGGugUguaucCCCGCGCCg -3'
miRNA:   3'- cGCGGCCcgcUUUCugAa----GGGUGCGG- -5'
13540 3' -57.1 NC_003444.1 + 9785 0.68 0.426639
Target:  5'- gGCGuugaucaCCGGuGuCGAcAGGCUuucUCCCGCGCUg -3'
miRNA:   3'- -CGC-------GGCC-C-GCUuUCUGA---AGGGUGCGG- -5'
13540 3' -57.1 NC_003444.1 + 13137 0.69 0.38116
Target:  5'- cUGgCGGGUGAuaucacACUgaaaUCCCGCGCCa -3'
miRNA:   3'- cGCgGCCCGCUuuc---UGA----AGGGUGCGG- -5'
13540 3' -57.1 NC_003444.1 + 12769 0.76 0.124537
Target:  5'- uGCGCCGGGUGAAagcagaucugaaugcGGAUaUCaacaCGCGCCu -3'
miRNA:   3'- -CGCGGCCCGCUU---------------UCUGaAGg---GUGCGG- -5'
13540 3' -57.1 NC_003444.1 + 1076 1.14 0.000208
Target:  5'- cGCGCCGGGCGAAAGACUUCCCACGCCu -3'
miRNA:   3'- -CGCGGCCCGCUUUCUGAAGGGUGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.