miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13540 5' -54.8 NC_003444.1 + 24468 0.66 0.644189
Target:  5'- uUGGUuuucguguucaucacACCGGAAgcgacuuCACUgagaaCUGCGCCg -3'
miRNA:   3'- cACCG---------------UGGCCUUau-----GUGAa----GGCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 13143 0.66 0.62829
Target:  5'- -cGGcCACUGGcggguGAUaucACACUgaaaucCCGCGCCa -3'
miRNA:   3'- caCC-GUGGCC-----UUA---UGUGAa-----GGCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 33455 0.66 0.605595
Target:  5'- cUGGUACCaGcuucuggACAUgaugCCGCGCCa -3'
miRNA:   3'- cACCGUGGcCuua----UGUGaa--GGCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 14650 0.67 0.57176
Target:  5'- -aGcGCACCGcuGGAUcCGCUgacCCGUGCCg -3'
miRNA:   3'- caC-CGUGGC--CUUAuGUGAa--GGCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 29234 0.67 0.547233
Target:  5'- uGUGGUucACCGuugugaagaGGAUACACgcagacauuucCCGCGCCu -3'
miRNA:   3'- -CACCG--UGGC---------CUUAUGUGaa---------GGCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 13019 0.68 0.527417
Target:  5'- aGUGGaaugGCUGGAcaucgGUGCGCaUCgGUGCCg -3'
miRNA:   3'- -CACCg---UGGCCU-----UAUGUGaAGgCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 24861 0.68 0.527417
Target:  5'- -aGGCACCGGGAgGCAC--CCG-GCa -3'
miRNA:   3'- caCCGUGGCCUUaUGUGaaGGCgCGg -5'
13540 5' -54.8 NC_003444.1 + 30416 0.68 0.505722
Target:  5'- cGUGGC-CCGGGGgaucACGCUUcauaCCGCGgUg -3'
miRNA:   3'- -CACCGuGGCCUUa---UGUGAA----GGCGCgG- -5'
13540 5' -54.8 NC_003444.1 + 22966 0.68 0.505722
Target:  5'- aGUGGUGCgGGAauguccuggcaAUACGCUUCUGuUGCa -3'
miRNA:   3'- -CACCGUGgCCU-----------UAUGUGAAGGC-GCGg -5'
13540 5' -54.8 NC_003444.1 + 12970 0.68 0.505722
Target:  5'- aUGGCauuacGCCGGAuaauGUcCGCgUCaCGCGCCg -3'
miRNA:   3'- cACCG-----UGGCCU----UAuGUGaAG-GCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 11369 0.68 0.495019
Target:  5'- -cGGCGCgGGGAUACACaccuuaUCCG-GCg -3'
miRNA:   3'- caCCGUGgCCUUAUGUGa-----AGGCgCGg -5'
13540 5' -54.8 NC_003444.1 + 24799 0.69 0.443171
Target:  5'- uGUGGUGCCGG-GUGC-CUcCCgGUGCCu -3'
miRNA:   3'- -CACCGUGGCCuUAUGuGAaGG-CGCGG- -5'
13540 5' -54.8 NC_003444.1 + 36915 0.7 0.394524
Target:  5'- uGUGGUcaaCGGuuuuCGCUUCaCGCGCCa -3'
miRNA:   3'- -CACCGug-GCCuuauGUGAAG-GCGCGG- -5'
13540 5' -54.8 NC_003444.1 + 32506 0.71 0.349469
Target:  5'- -cGGCGacuCCGGAuc-CACUUUCaGCGCCa -3'
miRNA:   3'- caCCGU---GGCCUuauGUGAAGG-CGCGG- -5'
13540 5' -54.8 NC_003444.1 + 11472 0.74 0.235793
Target:  5'- uGUGGCACCGGAGgcauuguUugACUgagCCGgaucuacCGCCg -3'
miRNA:   3'- -CACCGUGGCCUU-------AugUGAa--GGC-------GCGG- -5'
13540 5' -54.8 NC_003444.1 + 1038 1.13 0.000354
Target:  5'- cGUGGCACCGGAAUACACUUCCGCGCCg -3'
miRNA:   3'- -CACCGUGGCCUUAUGUGAAGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.