miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13544 3' -49.6 NC_003444.1 + 13027 0.66 0.911683
Target:  5'- gGCUGGAcAUCGGUGcgCaUCggUGCCGGu -3'
miRNA:   3'- -UGGCUU-UAGCCACaaG-AGaaGUGGCC- -5'
13544 3' -49.6 NC_003444.1 + 11433 0.67 0.889991
Target:  5'- cGCCGGAuaaGGUGUguaUCcccgCGCCGGu -3'
miRNA:   3'- -UGGCUUuagCCACAag-AGaa--GUGGCC- -5'
13544 3' -49.6 NC_003444.1 + 7548 0.67 0.857007
Target:  5'- uAUCGucAUCGGUGUUCacCUUuuuauuaacgCGCCGGa -3'
miRNA:   3'- -UGGCuuUAGCCACAAGa-GAA----------GUGGCC- -5'
13544 3' -49.6 NC_003444.1 + 25393 0.7 0.713286
Target:  5'- gGCUGGAGUU-GUGUUCUCUUuaCGCCGu -3'
miRNA:   3'- -UGGCUUUAGcCACAAGAGAA--GUGGCc -5'
13544 3' -49.6 NC_003444.1 + 36453 0.72 0.632568
Target:  5'- cGCCGGAAUCGGUacguaaacuGUUCgcguaCUUCcgcaACCGGu -3'
miRNA:   3'- -UGGCUUUAGCCA---------CAAGa----GAAG----UGGCC- -5'
13544 3' -49.6 NC_003444.1 + 4778 0.73 0.54042
Target:  5'- uCCGAAGUUGGUGUUCU----GCUGGg -3'
miRNA:   3'- uGGCUUUAGCCACAAGAgaagUGGCC- -5'
13544 3' -49.6 NC_003444.1 + 4877 0.97 0.018459
Target:  5'- uACCGAAAUCGGUGUcUUCUUCACCGGc -3'
miRNA:   3'- -UGGCUUUAGCCACAaGAGAAGUGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.