miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13545 5' -58.3 NC_003444.1 + 26813 0.66 0.475214
Target:  5'- cGUG-CAGAUGgcgaucagauuuuCCCGCUGGG-AUGGGCa -3'
miRNA:   3'- -CACuGUUUGC-------------GGGCGGCCUgUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 28883 0.66 0.466118
Target:  5'- gGUGugAAACGCUaCG-CGGGC-UGGGUa -3'
miRNA:   3'- -CACugUUUGCGG-GCgGCCUGuGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 3106 0.66 0.456117
Target:  5'- -gGAUAcuAUcCCCGCCGGA--CGGGCa -3'
miRNA:   3'- caCUGUu-UGcGGGCGGCCUguGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 11947 0.66 0.446233
Target:  5'- -gGACAAGCGU--GCCGGgAC-CGGGUu -3'
miRNA:   3'- caCUGUUUGCGggCGGCC-UGuGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 7398 0.66 0.42683
Target:  5'- gGUGACcuuuUGCCCGCCGaa---GGGCg -3'
miRNA:   3'- -CACUGuuu-GCGGGCGGCcugugCCCG- -5'
13545 5' -58.3 NC_003444.1 + 25607 0.66 0.42683
Target:  5'- -aGGCAgGACGCCCacgaaguaGCCGc-CugGGGCa -3'
miRNA:   3'- caCUGU-UUGCGGG--------CGGCcuGugCCCG- -5'
13545 5' -58.3 NC_003444.1 + 24664 0.68 0.363067
Target:  5'- gGUGGCAGcCGCCCGgaUGGAUugGGu- -3'
miRNA:   3'- -CACUGUUuGCGGGCg-GCCUGugCCcg -5'
13545 5' -58.3 NC_003444.1 + 29654 0.68 0.337837
Target:  5'- gGUGAuCAGugGCgCaCGCCGGACAacauuuucUGGGg -3'
miRNA:   3'- -CACU-GUUugCG-G-GCGGCCUGU--------GCCCg -5'
13545 5' -58.3 NC_003444.1 + 6007 0.69 0.313907
Target:  5'- -cGugGAGCcucaauaCCCGguuacguuCCGGACAUGGGCg -3'
miRNA:   3'- caCugUUUGc------GGGC--------GGCCUGUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 27235 0.69 0.298679
Target:  5'- -aGACAcaaAACGCCacgaCGcCCGGAgcugcacacuCGCGGGCg -3'
miRNA:   3'- caCUGU---UUGCGG----GC-GGCCU----------GUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 5600 0.69 0.298679
Target:  5'- -------gUGCCCGCCaGaACGCGGGCa -3'
miRNA:   3'- cacuguuuGCGGGCGGcC-UGUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 8377 0.7 0.269953
Target:  5'- -aGACccAGACGCCUGCCGacgaGCugGcGGCa -3'
miRNA:   3'- caCUG--UUUGCGGGCGGCc---UGugC-CCG- -5'
13545 5' -58.3 NC_003444.1 + 11296 0.7 0.265841
Target:  5'- gGUGACAcggucGAUGCCauuaacucugcgcaGUgGGGCGCGGGUg -3'
miRNA:   3'- -CACUGU-----UUGCGGg-------------CGgCCUGUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 27149 0.7 0.262454
Target:  5'- -aGAguGACGCCCGCgagugugcagcucCGGGCGuCGuGGCg -3'
miRNA:   3'- caCUguUUGCGGGCG-------------GCCUGU-GC-CCG- -5'
13545 5' -58.3 NC_003444.1 + 16789 0.71 0.237227
Target:  5'- gGUGGCAGGCguGCCUGuCUGGGgguuacCACGGGUa -3'
miRNA:   3'- -CACUGUUUG--CGGGC-GGCCU------GUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 8099 0.76 0.104199
Target:  5'- cGUGGC-GACGgggaCCGCCGGA-ACGGGCg -3'
miRNA:   3'- -CACUGuUUGCg---GGCGGCCUgUGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 8813 0.77 0.080556
Target:  5'- gGUGACAAuCGCCUGaCCGGGaccaaaGCGGGUa -3'
miRNA:   3'- -CACUGUUuGCGGGC-GGCCUg-----UGCCCG- -5'
13545 5' -58.3 NC_003444.1 + 6401 1.12 0.000195
Target:  5'- cGUGACAAACGCCCGCCGGACACGGGCg -3'
miRNA:   3'- -CACUGUUUGCGGGCGGCCUGUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.