Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 46920 | 0.66 | 0.300713 |
Target: 5'- cCGGCGuACCGGCCAcGUcu-UCGGCCu -3' miRNA: 3'- -GCCGUcUGGCCGGU-CGucuGGCCGGu -5' |
|||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 22505 | 0.66 | 0.300713 |
Target: 5'- cCGaGCGuAUCGGCgAGCuGGCCGGCa- -3' miRNA: 3'- -GC-CGUcUGGCCGgUCGuCUGGCCGgu -5' |
|||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 14481 | 0.66 | 0.303583 |
Target: 5'- uCGGCuGGugUGGCCgacgcucguccaaccGGUAGcACCGGuCCAg -3' miRNA: 3'- -GCCG-UCugGCCGG---------------UCGUC-UGGCC-GGU- -5' |
|||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 50205 | 0.66 | 0.307926 |
Target: 5'- gGGCAggagaagccuuGACCGGagGGCAGGCCGauGCUg -3' miRNA: 3'- gCCGU-----------CUGGCCggUCGUCUGGC--CGGu -5' |
|||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 17243 | 0.66 | 0.307926 |
Target: 5'- -uGCAGcACCGcGCCuGC-GACCuGGCCGa -3' miRNA: 3'- gcCGUC-UGGC-CGGuCGuCUGG-CCGGU- -5' |
|||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 31800 | 0.66 | 0.307926 |
Target: 5'- gCGGCAagccCCGGUCAGCcaGCCGGUUg -3' miRNA: 3'- -GCCGUcu--GGCCGGUCGucUGGCCGGu -5' |
|||||||
1355 | 3' | -63.6 | NC_001335.1 | + | 5863 | 0.66 | 0.31527 |
Target: 5'- aGGaucuGCgUGGCCAGCGGGCCGaGCUg -3' miRNA: 3'- gCCguc-UG-GCCGGUCGUCUGGC-CGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home