Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 38353 | 0.71 | 0.126629 |
|
Target: 5'- gGGCuGGCCGGCCgAGCGGAacuaagccguUCGGUCu -3' miRNA: 3'- gCCGuCUGGCCGG-UCGUCU----------GGCCGGu -5' |
|||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 33897 | 0.72 | 0.110744 |
|
Target: 5'- uGGCGGcguucgugacGCCGGCCGGCaAGACCGaCUAc -3' miRNA: 3'- gCCGUC----------UGGCCGGUCG-UCUGGCcGGU- -5' |
|||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 34415 | 0.73 | 0.086759 |
|
Target: 5'- uCGGUGGAgUGGCCAGCGGcCCGcuGCCGu -3' miRNA: 3'- -GCCGUCUgGCCGGUCGUCuGGC--CGGU- -5' |
|||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 5962 | 0.76 | 0.052818 |
|
Target: 5'- aGGCAGACCaGGCCcgAGCgggucGGGCUGGCCu -3' miRNA: 3'- gCCGUCUGG-CCGG--UCG-----UCUGGCCGGu -5' |
|||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 44706 | 0.8 | 0.025485 |
|
Target: 5'- aGGCAGAUCGuCCAGCAGaACUGGCCGu -3' miRNA: 3'- gCCGUCUGGCcGGUCGUC-UGGCCGGU- -5' |
|||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 16289 | 1.08 | 0.000179 |
|
Target: 5'- aCGGCAGACCGGCCAGCAGACCGGCCAc -3' miRNA: 3'- -GCCGUCUGGCCGGUCGUCUGGCCGGU- -5' |
|||||||
| 1355 | 3' | -63.6 | NC_001335.1 | + | 5863 | 0.66 | 0.31527 |
|
Target: 5'- aGGaucuGCgUGGCCAGCGGGCCGaGCUg -3' miRNA: 3'- gCCguc-UG-GCCGGUCGUCUGGC-CGGu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home