miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13551 5' -56.6 NC_003444.1 + 32495 0.66 0.519653
Target:  5'- cGCCGCCgcuggguuaaugaaaAGUACaC-GCGCuGGGUuAAGACa -3'
miRNA:   3'- -CGGCGG---------------UCGUG-GuCGCG-CCCA-UUUUG- -5'
13551 5' -56.6 NC_003444.1 + 12649 0.66 0.504572
Target:  5'- gGCCaGCCAGUGCuCuGCGCaGGUGu--- -3'
miRNA:   3'- -CGG-CGGUCGUG-GuCGCGcCCAUuuug -5'
13551 5' -56.6 NC_003444.1 + 12754 0.66 0.483366
Target:  5'- cGCUGUUucuGGCGCU-GCGCcGGGUGAAAg -3'
miRNA:   3'- -CGGCGG---UCGUGGuCGCG-CCCAUUUUg -5'
13551 5' -56.6 NC_003444.1 + 14313 0.66 0.472925
Target:  5'- aCCGCCugaaagGGCugCAGa-CGGGUGAggUg -3'
miRNA:   3'- cGGCGG------UCGugGUCgcGCCCAUUuuG- -5'
13551 5' -56.6 NC_003444.1 + 169 0.66 0.472925
Target:  5'- uCCgGCCAGCGCCuuGCGCGcguuGGcuUGGGGCg -3'
miRNA:   3'- cGG-CGGUCGUGGu-CGCGC----CC--AUUUUG- -5'
13551 5' -56.6 NC_003444.1 + 8200 0.67 0.452392
Target:  5'- uCCGCCAuuGCAgCCAccGCGCcGGUGAGAa -3'
miRNA:   3'- cGGCGGU--CGU-GGU--CGCGcCCAUUUUg -5'
13551 5' -56.6 NC_003444.1 + 15714 0.67 0.452392
Target:  5'- -gUGUCGGUAuguCCAuGCGCGGGUAAuGCc -3'
miRNA:   3'- cgGCGGUCGU---GGU-CGCGCCCAUUuUG- -5'
13551 5' -56.6 NC_003444.1 + 8074 0.67 0.421557
Target:  5'- uGCUGCCAGCgggcguacagauuGCCguGGCGaCGGGgaccgccGGAACg -3'
miRNA:   3'- -CGGCGGUCG-------------UGG--UCGC-GCCCa------UUUUG- -5'
13551 5' -56.6 NC_003444.1 + 12093 0.68 0.366533
Target:  5'- cGCCGUCGccGCACCugauGUG-GGGUAAGAg -3'
miRNA:   3'- -CGGCGGU--CGUGGu---CGCgCCCAUUUUg -5'
13551 5' -56.6 NC_003444.1 + 7936 0.69 0.332144
Target:  5'- cGCCGUUGGuCACCGGagccugcaCGCGGGUAcgucccacauAGACa -3'
miRNA:   3'- -CGGCGGUC-GUGGUC--------GCGCCCAU----------UUUG- -5'
13551 5' -56.6 NC_003444.1 + 35780 0.69 0.323926
Target:  5'- aGCCGCCGGacguUACCAGCuucuuucacGCuGGUGGGAUg -3'
miRNA:   3'- -CGGCGGUC----GUGGUCG---------CGcCCAUUUUG- -5'
13551 5' -56.6 NC_003444.1 + 488 0.7 0.285119
Target:  5'- aGCCGCCAGCGuCUgauuGGCcugGCGGGgaagaagAAAGCc -3'
miRNA:   3'- -CGGCGGUCGU-GG----UCG---CGCCCa------UUUUG- -5'
13551 5' -56.6 NC_003444.1 + 16676 0.71 0.270656
Target:  5'- aCCGCgCAGaaggauaaguUCGGCGCGGGUAAGAa -3'
miRNA:   3'- cGGCG-GUCgu--------GGUCGCGCCCAUUUUg -5'
13551 5' -56.6 NC_003444.1 + 436 0.71 0.250076
Target:  5'- aCCGCCcauuGCACCGGUGauGGUGuuGCc -3'
miRNA:   3'- cGGCGGu---CGUGGUCGCgcCCAUuuUG- -5'
13551 5' -56.6 NC_003444.1 + 30642 0.71 0.243509
Target:  5'- uGUCGCCAGUACguGUucacgcuggGCGGGaAAGGCa -3'
miRNA:   3'- -CGGCGGUCGUGguCG---------CGCCCaUUUUG- -5'
13551 5' -56.6 NC_003444.1 + 3468 0.75 0.140003
Target:  5'- cCCGgCGGCuaACuCAGCGCGGGUAAAcaaGCg -3'
miRNA:   3'- cGGCgGUCG--UG-GUCGCGCCCAUUU---UG- -5'
13551 5' -56.6 NC_003444.1 + 6390 0.8 0.063611
Target:  5'- cCCGCCGGaCACgGGCGCGGuUAAAGCg -3'
miRNA:   3'- cGGCGGUC-GUGgUCGCGCCcAUUUUG- -5'
13551 5' -56.6 NC_003444.1 + 12917 1.11 0.000292
Target:  5'- cGCCGCCAGCACCAGCGCGGGUAAAACc -3'
miRNA:   3'- -CGGCGGUCGUGGUCGCGCCCAUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.