miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13552 5' -59 NC_003444.1 + 15170 0.66 0.418335
Target:  5'- aCGUCUUCAUCCAugcGCCGGagcguGUCGCUg -3'
miRNA:   3'- aGCGGAGGUGGGU---CGGCCac---UAGUGG- -5'
13552 5' -59 NC_003444.1 + 12936 0.66 0.408978
Target:  5'- aCGCaUCCcgGCUUuguGCCGGUGAUC-CCu -3'
miRNA:   3'- aGCGgAGG--UGGGu--CGGCCACUAGuGG- -5'
13552 5' -59 NC_003444.1 + 2478 0.66 0.390661
Target:  5'- aUC-CUUCCACCCcgauaaCCGGUGAU-GCCg -3'
miRNA:   3'- -AGcGGAGGUGGGuc----GGCCACUAgUGG- -5'
13552 5' -59 NC_003444.1 + 26889 0.67 0.381706
Target:  5'- aUUGCCcau-CCCAGCgGGaaaaucUGAUCGCCa -3'
miRNA:   3'- -AGCGGagguGGGUCGgCC------ACUAGUGG- -5'
13552 5' -59 NC_003444.1 + 10188 0.67 0.381706
Target:  5'- gUCGCUUuacccacaCCACCCAgaauguuuucuGCCGG-GAUCcCCu -3'
miRNA:   3'- -AGCGGA--------GGUGGGU-----------CGGCCaCUAGuGG- -5'
13552 5' -59 NC_003444.1 + 6099 0.67 0.359072
Target:  5'- aCGCCaUCACCCauuacAucaccauucguuaccGCCGGggGAUCACCa -3'
miRNA:   3'- aGCGGaGGUGGG-----U---------------CGGCCa-CUAGUGG- -5'
13552 5' -59 NC_003444.1 + 6122 0.67 0.347279
Target:  5'- -gGUUUCCugCCAGgUGGUGG-CACUg -3'
miRNA:   3'- agCGGAGGugGGUCgGCCACUaGUGG- -5'
13552 5' -59 NC_003444.1 + 8199 0.68 0.292527
Target:  5'- cCGCCauugcagCCACCgC-GCCGGUGAgaACCg -3'
miRNA:   3'- aGCGGa------GGUGG-GuCGGCCACUagUGG- -5'
13552 5' -59 NC_003444.1 + 9955 0.68 0.292527
Target:  5'- aCGCCgCCACCgGGCUGaaaGUCGCCu -3'
miRNA:   3'- aGCGGaGGUGGgUCGGCcacUAGUGG- -5'
13552 5' -59 NC_003444.1 + 13247 1.12 0.000155
Target:  5'- gUCGCCUCCACCCAGCCGGUGAUCACCa -3'
miRNA:   3'- -AGCGGAGGUGGGUCGGCCACUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.