miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13553 3' -55.1 NC_003444.1 + 16116 0.66 0.615966
Target:  5'- cGC-CCGGUCCuGCAUgGU--CAGCCa -3'
miRNA:   3'- uCGcGGCCAGGcUGUGgCAuuGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 7943 0.67 0.593586
Target:  5'- -aUGCCGuUCCGACucuGCCGUuuACAGCUu -3'
miRNA:   3'- ucGCGGCcAGGCUG---UGGCAu-UGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 8183 0.67 0.57134
Target:  5'- cGCGCCGGUgaGA-ACCGgaGCGcCCg -3'
miRNA:   3'- uCGCGGCCAggCUgUGGCauUGUuGG- -5'
13553 3' -55.1 NC_003444.1 + 16146 0.67 0.560291
Target:  5'- cGGCgauuGCCGGUgCGGCACCuucauUAACCc -3'
miRNA:   3'- -UCG----CGGCCAgGCUGUGGcauu-GUUGG- -5'
13553 3' -55.1 NC_003444.1 + 8123 0.67 0.549301
Target:  5'- gGGCGCucCGGUucucaCCGGCGCgGUGGCuGCa -3'
miRNA:   3'- -UCGCG--GCCA-----GGCUGUGgCAUUGuUGg -5'
13553 3' -55.1 NC_003444.1 + 5086 0.67 0.549301
Target:  5'- uGUGCCGGUCacuGAUGCUGc--CAGCCc -3'
miRNA:   3'- uCGCGGCCAGg--CUGUGGCauuGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 3845 0.68 0.537291
Target:  5'- aAGCGCCGGgCCGGaugauuuCGCgGaAugAACCg -3'
miRNA:   3'- -UCGCGGCCaGGCU-------GUGgCaUugUUGG- -5'
13553 3' -55.1 NC_003444.1 + 13110 0.69 0.474665
Target:  5'- cGCGCCaGUcguucaauaCCGGCACCGauGCGcACCg -3'
miRNA:   3'- uCGCGGcCA---------GGCUGUGGCauUGU-UGG- -5'
13553 3' -55.1 NC_003444.1 + 27710 0.69 0.464406
Target:  5'- uGCGCCGGUUuccuUGAuCACCGguuacgcCAACCc -3'
miRNA:   3'- uCGCGGCCAG----GCU-GUGGCauu----GUUGG- -5'
13553 3' -55.1 NC_003444.1 + 8342 0.69 0.444243
Target:  5'- uGUGCCGGUCUu-UGCCGUAuacacAUGACCa -3'
miRNA:   3'- uCGCGGCCAGGcuGUGGCAU-----UGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 1121 0.7 0.414947
Target:  5'- uGGCGCgCGGUuuGAacCGCUGaucGGCAACCc -3'
miRNA:   3'- -UCGCG-GCCAggCU--GUGGCa--UUGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 6496 0.7 0.395159
Target:  5'- aGGCGuCCGGUCUGAuaaccgggguuuuCACCcgGUGcCGACCg -3'
miRNA:   3'- -UCGC-GGCCAGGCU-------------GUGG--CAUuGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 31922 0.73 0.266227
Target:  5'- uGGUGCCGuUCCGGCGCauc-ACAACCg -3'
miRNA:   3'- -UCGCGGCcAGGCUGUGgcauUGUUGG- -5'
13553 3' -55.1 NC_003444.1 + 14349 1.12 0.000413
Target:  5'- uAGCGCCGGUCCGACACCGUAACAACCa -3'
miRNA:   3'- -UCGCGGCCAGGCUGUGGCAUUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.