miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13554 5' -56.7 NC_003444.1 + 26908 0.66 0.542218
Target:  5'- aGCCGcgCGCUGuaaaaucauuGC-CCaUCCCAGCGg -3'
miRNA:   3'- cCGGUa-GCGAC----------UGuGGaAGGGUCGCg -5'
13554 5' -56.7 NC_003444.1 + 32954 0.66 0.542218
Target:  5'- uGCUuUCGaCUG-CACCaUCCCcuGCGCa -3'
miRNA:   3'- cCGGuAGC-GACuGUGGaAGGGu-CGCG- -5'
13554 5' -56.7 NC_003444.1 + 28426 0.66 0.530278
Target:  5'- gGGCCAgcacucacccugaUCGCUGGCAUUaUCagCCAGCu- -3'
miRNA:   3'- -CCGGU-------------AGCGACUGUGGaAG--GGUCGcg -5'
13554 5' -56.7 NC_003444.1 + 32282 0.66 0.519507
Target:  5'- uGGCUGauucguaaugaccUCGCgGAUGCCUUaCCUgaaAGCGCa -3'
miRNA:   3'- -CCGGU-------------AGCGaCUGUGGAA-GGG---UCGCG- -5'
13554 5' -56.7 NC_003444.1 + 16884 0.66 0.509888
Target:  5'- uGGUCGU-GCUG-CGCCUUCuCCAGacugGCc -3'
miRNA:   3'- -CCGGUAgCGACuGUGGAAG-GGUCg---CG- -5'
13554 5' -56.7 NC_003444.1 + 16146 0.66 0.503517
Target:  5'- cGGCgAUUGCcggugcGGCACCUUCauuaacccgcguucaUCAGCGUg -3'
miRNA:   3'- -CCGgUAGCGa-----CUGUGGAAG---------------GGUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 13973 0.67 0.476327
Target:  5'- cGGCCcgC-CUGAUgcuuaucuGCCUgaacccgaagccCCCGGCGCg -3'
miRNA:   3'- -CCGGuaGcGACUG--------UGGAa-----------GGGUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 4260 0.67 0.457937
Target:  5'- cGCCAUaCGUUGAUuaaugGCUUUCUgUAGCGCg -3'
miRNA:   3'- cCGGUA-GCGACUG-----UGGAAGG-GUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 8559 0.67 0.457937
Target:  5'- cGGUCAUCGUga--ACCguuUCCCcuucGGCGCa -3'
miRNA:   3'- -CCGGUAGCGacugUGGa--AGGG----UCGCG- -5'
13554 5' -56.7 NC_003444.1 + 12435 0.67 0.437958
Target:  5'- uGCCGagGCUGACACCggaa-AGCGUu -3'
miRNA:   3'- cCGGUagCGACUGUGGaagggUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 28956 0.67 0.437958
Target:  5'- -cCCAUCGCaGAUACCcagCCC-GCGUa -3'
miRNA:   3'- ccGGUAGCGaCUGUGGaa-GGGuCGCG- -5'
13554 5' -56.7 NC_003444.1 + 30545 0.68 0.39398
Target:  5'- gGGCCugaaaguaugaaGCUGAUccuGCCUUucccgCCCAGCGUg -3'
miRNA:   3'- -CCGGuag---------CGACUG---UGGAA-----GGGUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 15155 0.68 0.389374
Target:  5'- cGCCggagcguGUCGCUGACGuCCagCCUGGCGa -3'
miRNA:   3'- cCGG-------UAGCGACUGU-GGaaGGGUCGCg -5'
13554 5' -56.7 NC_003444.1 + 15398 0.68 0.381174
Target:  5'- aGGUCAUCGCgcUGAauaACacUCCCGGCGg -3'
miRNA:   3'- -CCGGUAGCG--ACUg--UGgaAGGGUCGCg -5'
13554 5' -56.7 NC_003444.1 + 16287 0.7 0.329521
Target:  5'- cGGCgGgaaCGCaGAC-CCUUCgCCAGCGUc -3'
miRNA:   3'- -CCGgUa--GCGaCUGuGGAAG-GGUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 30459 0.7 0.31349
Target:  5'- gGGCCAcgccacgcuuuaUCGUgaUGAUGCCUUuuuucUCCAGUGCg -3'
miRNA:   3'- -CCGGU------------AGCG--ACUGUGGAA-----GGGUCGCG- -5'
13554 5' -56.7 NC_003444.1 + 16362 0.7 0.293543
Target:  5'- aGCCGUUGCUGACGCUggcgaagggucugcgUUCCCGcCGg -3'
miRNA:   3'- cCGGUAGCGACUGUGG---------------AAGGGUcGCg -5'
13554 5' -56.7 NC_003444.1 + 15359 1.14 0.000174
Target:  5'- aGGCCAUCGCUGACACCUUCCCAGCGCa -3'
miRNA:   3'- -CCGGUAGCGACUGUGGAAGGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.