miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1356 5' -61.5 NC_001335.1 + 17165 0.66 0.390379
Target:  5'- cGGCCAG-GUCGcAGGCGcgguGCUGCa--- -3'
miRNA:   3'- cCCGGUCgCAGC-UCCGC----CGACGgaac -5'
1356 5' -61.5 NC_001335.1 + 40974 0.66 0.37317
Target:  5'- cGGGCCGGUGaCGuGGUGGa-GCCc-- -3'
miRNA:   3'- -CCCGGUCGCaGCuCCGCCgaCGGaac -5'
1356 5' -61.5 NC_001335.1 + 4813 0.66 0.37317
Target:  5'- aGGGUUcaAGCGgaugcccCGAGGCGGgCcagcgGCCUUGc -3'
miRNA:   3'- -CCCGG--UCGCa------GCUCCGCC-Ga----CGGAAC- -5'
1356 5' -61.5 NC_001335.1 + 50738 0.66 0.372324
Target:  5'- aGGcCCAGCGaCGAgucgucggccgggGGCGGCgcaCCUUGg -3'
miRNA:   3'- cCC-GGUCGCaGCU-------------CCGCCGac-GGAAC- -5'
1356 5' -61.5 NC_001335.1 + 50191 0.66 0.364761
Target:  5'- aGGCCGucGCGUCcGGGCaGGagaaGCCUUGa -3'
miRNA:   3'- cCCGGU--CGCAGcUCCG-CCga--CGGAAC- -5'
1356 5' -61.5 NC_001335.1 + 7592 0.66 0.356484
Target:  5'- aGGGCCuGCucaucgccCGAGGCgacuccaccuGGCUGCCg-- -3'
miRNA:   3'- -CCCGGuCGca------GCUCCG----------CCGACGGaac -5'
1356 5' -61.5 NC_001335.1 + 10321 0.66 0.354027
Target:  5'- gGGGCCggaucguucuugacAGCGcCGAugaucugucGGCGuGCUGCCa-- -3'
miRNA:   3'- -CCCGG--------------UCGCaGCU---------CCGC-CGACGGaac -5'
1356 5' -61.5 NC_001335.1 + 12123 0.67 0.340329
Target:  5'- gGGGCCAG-GUC--GGCGGcCUGuCCUUc -3'
miRNA:   3'- -CCCGGUCgCAGcuCCGCC-GAC-GGAAc -5'
1356 5' -61.5 NC_001335.1 + 442 0.67 0.323944
Target:  5'- aGGGCCgcgcacuGGCG-CGGccuugagauccGGCGGUUGCCg-- -3'
miRNA:   3'- -CCCGG-------UCGCaGCU-----------CCGCCGACGGaac -5'
1356 5' -61.5 NC_001335.1 + 48324 0.67 0.317104
Target:  5'- uGGGCCAGCaggaCGuGGCcGCUGCggUGg -3'
miRNA:   3'- -CCCGGUCGca--GCuCCGcCGACGgaAC- -5'
1356 5' -61.5 NC_001335.1 + 49973 0.67 0.317104
Target:  5'- uGGGCCuacacaAGgGUUcaGAcGGCGGCUGUCUa- -3'
miRNA:   3'- -CCCGG------UCgCAG--CU-CCGCCGACGGAac -5'
1356 5' -61.5 NC_001335.1 + 13191 0.67 0.317104
Target:  5'- cGGGCacCGGUGUCGAGGaGGCUcaucagagcaccGCCg-- -3'
miRNA:   3'- -CCCG--GUCGCAGCUCCgCCGA------------CGGaac -5'
1356 5' -61.5 NC_001335.1 + 14794 0.67 0.309632
Target:  5'- uGGGCagcucaaucGCGUCGucGCGGCgaacuccaGCCUUGu -3'
miRNA:   3'- -CCCGgu-------CGCAGCucCGCCGa-------CGGAAC- -5'
1356 5' -61.5 NC_001335.1 + 14401 0.68 0.288026
Target:  5'- aGGCCGGCGUagGAGcaGCGG-UGCCUg- -3'
miRNA:   3'- cCCGGUCGCAg-CUC--CGCCgACGGAac -5'
1356 5' -61.5 NC_001335.1 + 2283 0.69 0.248402
Target:  5'- cGGGCCAGCGaggUCGAGGCuGaacuucGCCg-- -3'
miRNA:   3'- -CCCGGUCGC---AGCUCCGcCga----CGGaac -5'
1356 5' -61.5 NC_001335.1 + 5527 0.69 0.248402
Target:  5'- gGGGCgGGC-UCGAcgcugagucGGCGGCUGaCCUc- -3'
miRNA:   3'- -CCCGgUCGcAGCU---------CCGCCGAC-GGAac -5'
1356 5' -61.5 NC_001335.1 + 25106 0.72 0.155993
Target:  5'- cGGGuguacuccuCCAGCGUgauggCGcuGGCGGCUGCCUUc -3'
miRNA:   3'- -CCC---------GGUCGCA-----GCu-CCGCCGACGGAAc -5'
1356 5' -61.5 NC_001335.1 + 1362 0.72 0.147903
Target:  5'- gGGGCaccggGGUGUUGGGGCuGCUGCCa-- -3'
miRNA:   3'- -CCCGg----UCGCAGCUCCGcCGACGGaac -5'
1356 5' -61.5 NC_001335.1 + 16374 1.02 0.000778
Target:  5'- cGGGgCAGCGUCGAGGCGGCUGCCUUGa -3'
miRNA:   3'- -CCCgGUCGCAGCUCCGCCGACGGAAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.