miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13562 3' -60.3 NC_003444.1 + 12367 0.66 0.357973
Target:  5'- uUCCcGGuACGCCAcauUUUCuGCACCUGCu -3'
miRNA:   3'- -AGGuCC-UGCGGUu--AGGGcCGUGGGCG- -5'
13562 3' -60.3 NC_003444.1 + 13114 0.66 0.341383
Target:  5'- aUCCc--GCGCCAGUCguucaauaCCGGCACCgaugCGCa -3'
miRNA:   3'- -AGGuccUGCGGUUAG--------GGCCGUGG----GCG- -5'
13562 3' -60.3 NC_003444.1 + 31917 0.66 0.332499
Target:  5'- gCCAGuGGUGCC-GUUCCGGCGCaucacaaCCGCu -3'
miRNA:   3'- aGGUC-CUGCGGuUAGGGCCGUG-------GGCG- -5'
13562 3' -60.3 NC_003444.1 + 27553 0.67 0.287764
Target:  5'- uUCCGGGACGUUAcacuGUUCaGGCACCUuauaaaGCg -3'
miRNA:   3'- -AGGUCCUGCGGU----UAGGgCCGUGGG------CG- -5'
13562 3' -60.3 NC_003444.1 + 25940 0.68 0.273713
Target:  5'- cCCGGGAgacaugauuuuUGUCGAUCCUGaaGUACCUGCc -3'
miRNA:   3'- aGGUCCU-----------GCGGUUAGGGC--CGUGGGCG- -5'
13562 3' -60.3 NC_003444.1 + 21078 0.68 0.266221
Target:  5'- uUCCGGGuuuauccAUGCCA--CCCGGCGCU-GCa -3'
miRNA:   3'- -AGGUCC-------UGCGGUuaGGGCCGUGGgCG- -5'
13562 3' -60.3 NC_003444.1 + 15614 0.69 0.240996
Target:  5'- aCgGGGACuaugucgucuggGCUAAagaaguUCCCGGCauuACCCGCg -3'
miRNA:   3'- aGgUCCUG------------CGGUU------AGGGCCG---UGGGCG- -5'
13562 3' -60.3 NC_003444.1 + 6064 0.69 0.23425
Target:  5'- aCCGGGuauugaggcuccACGCCAaaguuAUCCgCGGgcauaucCACCCGCa -3'
miRNA:   3'- aGGUCC------------UGCGGU-----UAGG-GCC-------GUGGGCG- -5'
13562 3' -60.3 NC_003444.1 + 24857 0.69 0.22885
Target:  5'- aCCGGGAgGCa---CCCGGCACCa-- -3'
miRNA:   3'- aGGUCCUgCGguuaGGGCCGUGGgcg -5'
13562 3' -60.3 NC_003444.1 + 31415 0.7 0.190362
Target:  5'- cUCCAGGAgGCUguuggcuuaccGAaUCUGGCACCgCGCu -3'
miRNA:   3'- -AGGUCCUgCGG-----------UUaGGGCCGUGG-GCG- -5'
13562 3' -60.3 NC_003444.1 + 7927 0.71 0.175681
Target:  5'- aUCCAGGAUGCCAucaaugccGUUCCGacuCugCCGUu -3'
miRNA:   3'- -AGGUCCUGCGGU--------UAGGGCc--GugGGCG- -5'
13562 3' -60.3 NC_003444.1 + 24805 0.71 0.166461
Target:  5'- gCCGGG-UGCC--UCCCGGUGCCUGg -3'
miRNA:   3'- aGGUCCuGCGGuuAGGGCCGUGGGCg -5'
13562 3' -60.3 NC_003444.1 + 8170 0.73 0.123138
Target:  5'- aCCGGaGCGCCcGUUCCGGCGgucCCCGUc -3'
miRNA:   3'- aGGUCcUGCGGuUAGGGCCGU---GGGCG- -5'
13562 3' -60.3 NC_003444.1 + 27650 1.11 0.000144
Target:  5'- uUCCAGGACGCCAAUCCCGGCACCCGCu -3'
miRNA:   3'- -AGGUCCUGCGGUUAGGGCCGUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.