Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 35091 | 0.66 | 0.499965 |
|
Target: 5'- cGCuGGGGCGUCAGgCguuaggugUUGAACUUGaGUc -3' miRNA: 3'- -UGuCCCCGUAGUC-Ga-------GACUUGGAC-CG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 1241 | 0.66 | 0.489294 |
|
Target: 5'- gAUGGGGGCgcgacGUCAGCcaCUGAugUgGGCc -3' miRNA: 3'- -UGUCCCCG-----UAGUCGa-GACUugGaCCG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 23316 | 0.67 | 0.46828 |
|
Target: 5'- cGCAGGGGCAUuugCAGUaaUGaAAUCaGGCg -3' miRNA: 3'- -UGUCCCCGUA---GUCGagAC-UUGGaCCG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 10429 | 0.68 | 0.362002 |
|
Target: 5'- gAUGGGGGCAa-GGCUCUGugcAGCCUGa- -3' miRNA: 3'- -UGUCCCCGUagUCGAGAC---UUGGACcg -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 1629 | 0.69 | 0.336071 |
|
Target: 5'- -gAGGGGCAgccguGCauUCUGGccuuugACCUGGCg -3' miRNA: 3'- ugUCCCCGUagu--CG--AGACU------UGGACCG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 31417 | 0.69 | 0.327734 |
|
Target: 5'- cCAGGaGGCuGUUGGCUUaccGAAUCUGGCa -3' miRNA: 3'- uGUCC-CCG-UAGUCGAGa--CUUGGACCG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 457 | 0.71 | 0.269399 |
|
Target: 5'- uACGGGGGCaAUgcucggacucgacccCAGCagccgccagcgUCUGAuugGCCUGGCg -3' miRNA: 3'- -UGUCCCCG-UA---------------GUCG-----------AGACU---UGGACCG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 31867 | 0.72 | 0.227016 |
|
Target: 5'- uGCAGGGGCGUgucCuGCUg-GAGCCUGaGCc -3' miRNA: 3'- -UGUCCCCGUA---GuCGAgaCUUGGAC-CG- -5' |
|||||||
| 13565 | 5' | -56.4 | NC_003444.1 | + | 31900 | 1.1 | 0.000312 |
|
Target: 5'- aACAGGGGCAUCAGCUCUGAACCUGGCc -3' miRNA: 3'- -UGUCCCCGUAGUCGAGACUUGGACCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home