miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13566 5' -56.4 NC_003444.1 + 6339 0.66 0.56138
Target:  5'- gCCCGugucCGGCGGGcguuuGUCAcgaUUgGUCAGCg -3'
miRNA:   3'- -GGGCuu--GCCGUCC-----UAGU---AGgCGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 7259 0.67 0.528873
Target:  5'- uCCUGc-UGGCGGGuAUCGUCUucgGUCAGCu -3'
miRNA:   3'- -GGGCuuGCCGUCC-UAGUAGG---CGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 31658 0.67 0.518188
Target:  5'- uCCCGGuACGGCuGuAUCGUUCGCgCuGCu -3'
miRNA:   3'- -GGGCU-UGCCGuCcUAGUAGGCG-GuCG- -5'
13566 5' -56.4 NC_003444.1 + 904 0.67 0.507591
Target:  5'- cCCCguaaGAACGGCAaaucGGcaAUC-UCUGCCGGUg -3'
miRNA:   3'- -GGG----CUUGCCGU----CC--UAGuAGGCGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 71 0.67 0.48668
Target:  5'- gCUgGAACGGCGGGG-CGUUC-CgGGCg -3'
miRNA:   3'- -GGgCUUGCCGUCCUaGUAGGcGgUCG- -5'
13566 5' -56.4 NC_003444.1 + 12380 0.67 0.48668
Target:  5'- uUCCGGugucagccuCGGCAGcGAUCugcaaCCGCgCGGCg -3'
miRNA:   3'- -GGGCUu--------GCCGUC-CUAGua---GGCG-GUCG- -5'
13566 5' -56.4 NC_003444.1 + 22821 0.67 0.476379
Target:  5'- gCCCGAgaucGCGGCGu--UCggUUGCCAGCa -3'
miRNA:   3'- -GGGCU----UGCCGUccuAGuaGGCGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 16474 0.68 0.466187
Target:  5'- gCCgGAAUGGCGGuauuacuggcaGGUCAacaUGCCAGCu -3'
miRNA:   3'- -GGgCUUGCCGUC-----------CUAGUag-GCGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 7458 0.68 0.456108
Target:  5'- gCCCuu-CGGCGGGcaaaagGUCA-CCGCgGGCa -3'
miRNA:   3'- -GGGcuuGCCGUCC------UAGUaGGCGgUCG- -5'
13566 5' -56.4 NC_003444.1 + 22130 0.68 0.456108
Target:  5'- aCUCu--CGGUuGGAUCGUCUGgCAGCa -3'
miRNA:   3'- -GGGcuuGCCGuCCUAGUAGGCgGUCG- -5'
13566 5' -56.4 NC_003444.1 + 8459 0.69 0.380044
Target:  5'- -aCGGGCGGUAcGGcUUG-CCGCCAGCu -3'
miRNA:   3'- ggGCUUGCCGU-CCuAGUaGGCGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 9425 0.69 0.380044
Target:  5'- aCCC-AGCGGgaAGGAU-GUCCGCgAGCu -3'
miRNA:   3'- -GGGcUUGCCg-UCCUAgUAGGCGgUCG- -5'
13566 5' -56.4 NC_003444.1 + 20681 0.7 0.345327
Target:  5'- aCCGAugGGUucAGGAUCGagucuaUuuGCCGuGCg -3'
miRNA:   3'- gGGCUugCCG--UCCUAGU------AggCGGU-CG- -5'
13566 5' -56.4 NC_003444.1 + 3046 0.71 0.290207
Target:  5'- gCCCGucCGGCGGGGauagUAUCCGUUaaaAGCg -3'
miRNA:   3'- -GGGCuuGCCGUCCUa---GUAGGCGG---UCG- -5'
13566 5' -56.4 NC_003444.1 + 8234 0.71 0.288005
Target:  5'- gUUGAACGGCAGaccGAuauaaucaaacggcUCAUCCGCCAuuGCa -3'
miRNA:   3'- gGGCUUGCCGUC---CU--------------AGUAGGCGGU--CG- -5'
13566 5' -56.4 NC_003444.1 + 16270 0.72 0.268783
Target:  5'- gCCGGAugaauguauucCGGCGGGAacgCAgacccUUCGCCAGCg -3'
miRNA:   3'- gGGCUU-----------GCCGUCCUa--GU-----AGGCGGUCG- -5'
13566 5' -56.4 NC_003444.1 + 6837 0.73 0.204864
Target:  5'- aCCGggUGGCAGGcgCGgcacaguucaaaaaUCUGCCGGa -3'
miRNA:   3'- gGGCuuGCCGUCCuaGU--------------AGGCGGUCg -5'
13566 5' -56.4 NC_003444.1 + 32011 1.14 0.000234
Target:  5'- gCCCGAACGGCAGGAUCAUCCGCCAGCg -3'
miRNA:   3'- -GGGCUUGCCGUCCUAGUAGGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.