Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1357 | 3' | -56.5 | NC_001335.1 | + | 32612 | 0.66 | 0.625395 |
Target: 5'- aGAAG-CGGUacuGCCaGCA-CGGCGAGAUg -3' miRNA: 3'- -CUUCaGUCG---CGGcCGUaGUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 16917 | 1.1 | 0.00049 |
Target: 5'- cGAAGUCAGCGCCGGCAUCAGCGAGACg -3' miRNA: 3'- -CUUCAGUCGCGGCCGUAGUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 17218 | 0.75 | 0.165816 |
Target: 5'- cGAGGgccgucgcCAGCGCCGGgAUguGCGGGGCc -3' miRNA: 3'- -CUUCa-------GUCGCGGCCgUAguCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 8720 | 0.74 | 0.206091 |
Target: 5'- --cGUCAGCcucGUCGGCAUCGcCGAGGCg -3' miRNA: 3'- cuuCAGUCG---CGGCCGUAGUcGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 11904 | 0.72 | 0.29602 |
Target: 5'- uGAGGUCGGCguuggaGCCGGUgccguccggguccAcCAGCGAGACc -3' miRNA: 3'- -CUUCAGUCG------CGGCCG-------------UaGUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 16322 | 0.7 | 0.367278 |
Target: 5'- --cGcCAGCGCCGGCuccgaacgcagacagCAGCGAcGGCa -3' miRNA: 3'- cuuCaGUCGCGGCCGua-------------GUCGCU-CUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 16665 | 0.69 | 0.415548 |
Target: 5'- cGAGUUcGCGCCGGCGUuggaCAGCGucaGGAa -3' miRNA: 3'- cUUCAGuCGCGGCCGUA----GUCGC---UCUg -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 20628 | 0.69 | 0.448487 |
Target: 5'- gGAGGUCAaucgcuccaccgaccGCGCCGaGCG-CGGCGAG-Cu -3' miRNA: 3'- -CUUCAGU---------------CGCGGC-CGUaGUCGCUCuG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 3605 | 0.68 | 0.48488 |
Target: 5'- uGAAGuUCAGUGUCcacGCAgggaaCAGCGAGACc -3' miRNA: 3'- -CUUC-AGUCGCGGc--CGUa----GUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 39607 | 0.68 | 0.495239 |
Target: 5'- -cAGUCGGCacCCGGCAcugCAuGCGAGAg -3' miRNA: 3'- cuUCAGUCGc-GGCCGUa--GU-CGCUCUg -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 29861 | 0.66 | 0.585564 |
Target: 5'- uGAGUCGGuCGCUGGUgccguacgagcacaaGaUCAGUGAGAUc -3' miRNA: 3'- cUUCAGUC-GCGGCCG---------------U-AGUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 46346 | 0.66 | 0.581162 |
Target: 5'- -cGGUCAGCGCgaCGGCcgCAacGCGGcGAUg -3' miRNA: 3'- cuUCAGUCGCG--GCCGuaGU--CGCU-CUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 5613 | 0.66 | 0.57019 |
Target: 5'- cGAGGUCAGcCGCCGaC-UCAGCGucGAg -3' miRNA: 3'- -CUUCAGUC-GCGGCcGuAGUCGCu-CUg -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 16001 | 0.66 | 0.57019 |
Target: 5'- uGAAGUCGGCcuugGCCugGGCcgCAuCGAGAUg -3' miRNA: 3'- -CUUCAGUCG----CGG--CCGuaGUcGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 12279 | 0.67 | 0.537611 |
Target: 5'- cGAGGUU-GUGCUGcCA-CAGCGAGACg -3' miRNA: 3'- -CUUCAGuCGCGGCcGUaGUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 34271 | 0.67 | 0.505698 |
Target: 5'- -cGGUguGCGCCGGU--CGGCGcGGAUg -3' miRNA: 3'- cuUCAguCGCGGCCGuaGUCGC-UCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 41488 | 0.67 | 0.505698 |
Target: 5'- -uGGUCuGCGCCGGCccCGGCaccGGGAa -3' miRNA: 3'- cuUCAGuCGCGGCCGuaGUCG---CUCUg -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 32890 | 0.66 | 0.614304 |
Target: 5'- aGGAGcCGGgGCCGGC-UCGgGCuGGGCa -3' miRNA: 3'- -CUUCaGUCgCGGCCGuAGU-CGcUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 17573 | 0.71 | 0.327812 |
Target: 5'- --cGUcCAGgGCCugaucaacGGCAUCGGCGGGAUg -3' miRNA: 3'- cuuCA-GUCgCGG--------CCGUAGUCGCUCUG- -5' |
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1357 | 3' | -56.5 | NC_001335.1 | + | 27404 | 0.7 | 0.361197 |
Target: 5'- uGAAGUCGGCGUCuGCcUCggagaGGUGGGACg -3' miRNA: 3'- -CUUCAGUCGCGGcCGuAG-----UCGCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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