Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1357 | 5' | -49.5 | NC_001335.1 | + | 16880 | 1.14 | 0.002065 |
Target: 5'- cCGAACCCGUUGAUGAACGUCGACAGCg -3' miRNA: 3'- -GCUUGGGCAACUACUUGCAGCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 29386 | 0.76 | 0.490707 |
Target: 5'- cCGcGCCUgcaguggGUUGAUGAACGUgUGGCAGCg -3' miRNA: 3'- -GCuUGGG-------CAACUACUUGCA-GCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 20593 | 0.76 | 0.491766 |
Target: 5'- gCGAGCUggcUGUUGAUGAACGagGuCAGCa -3' miRNA: 3'- -GCUUGG---GCAACUACUUGCagCuGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 8362 | 0.75 | 0.579351 |
Target: 5'- aGAagGCCCGUagcggccgggUGGUGAugGUucgaUGACAGCa -3' miRNA: 3'- gCU--UGGGCA----------ACUACUugCA----GCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 21723 | 0.74 | 0.590593 |
Target: 5'- aCGAACCUGcgcGAUG-ACcUCGACAGCg -3' miRNA: 3'- -GCUUGGGCaa-CUACuUGcAGCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 45247 | 0.74 | 0.609786 |
Target: 5'- aCGAACCCGUagcucuUGAUGuacuccucgaggucGAUGUCGACguacAGCg -3' miRNA: 3'- -GCUUGGGCA------ACUAC--------------UUGCAGCUG----UCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 18057 | 0.72 | 0.747055 |
Target: 5'- gCGAagACCCGUUGGUGAA----GGCAGCc -3' miRNA: 3'- -GCU--UGGGCAACUACUUgcagCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 24924 | 0.72 | 0.747055 |
Target: 5'- aGAACCCGUgccgGAUcGAGCagaaGGCAGCc -3' miRNA: 3'- gCUUGGGCAa---CUA-CUUGcag-CUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 1433 | 0.71 | 0.768213 |
Target: 5'- uGGGCgCGUgcUGuuucUGGGCGUCGAUGGCg -3' miRNA: 3'- gCUUGgGCA--ACu---ACUUGCAGCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 33147 | 0.71 | 0.798805 |
Target: 5'- uCGGcCUCGUaggcgucugGAUGGACGUUGGCGGUg -3' miRNA: 3'- -GCUuGGGCAa--------CUACUUGCAGCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 49730 | 0.7 | 0.818296 |
Target: 5'- uGuGCCCGUUGcgGucuguGCGUCaACGGCc -3' miRNA: 3'- gCuUGGGCAACuaCu----UGCAGcUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 16438 | 0.7 | 0.827736 |
Target: 5'- gGAACaCCGgggUGAgucccugcugGAACGUCGAggagaCAGCg -3' miRNA: 3'- gCUUG-GGCa--ACUa---------CUUGCAGCU-----GUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 9744 | 0.7 | 0.827736 |
Target: 5'- -cGGCCUGUUGGgcacGAugGUCGAC-GCc -3' miRNA: 3'- gcUUGGGCAACUa---CUugCAGCUGuCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 26916 | 0.7 | 0.827736 |
Target: 5'- gGAACUCGgagacgUGAUGugguACGUCGccCAGCu -3' miRNA: 3'- gCUUGGGCa-----ACUACu---UGCAGCu-GUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 17339 | 0.7 | 0.845951 |
Target: 5'- uGGACCagGUUGAcGAugGUCGGaacuagcuCAGCg -3' miRNA: 3'- gCUUGGg-CAACUaCUugCAGCU--------GUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 7895 | 0.69 | 0.854707 |
Target: 5'- uCGAACCCGagGGUGAuccggucaccGCG-CuGCAGCg -3' miRNA: 3'- -GCUUGGGCaaCUACU----------UGCaGcUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 12597 | 0.69 | 0.87946 |
Target: 5'- uGAGCCCGaagUGAUGGcgcugaucgaGCGcCGGCuccAGCa -3' miRNA: 3'- gCUUGGGCa--ACUACU----------UGCaGCUG---UCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 27599 | 0.68 | 0.901787 |
Target: 5'- aGAACUCGUgguccUGuuCGUCGGCGGUa -3' miRNA: 3'- gCUUGGGCAacu--ACuuGCAGCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 37426 | 0.68 | 0.901787 |
Target: 5'- ---gUCCGUUGAUGAucuCuUCGGCGGUg -3' miRNA: 3'- gcuuGGGCAACUACUu--GcAGCUGUCG- -5' |
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1357 | 5' | -49.5 | NC_001335.1 | + | 48805 | 0.68 | 0.908665 |
Target: 5'- aCGAGCCCGgUGA-GAGCGgauacaucaagCGcaACGGCa -3' miRNA: 3'- -GCUUGGGCaACUaCUUGCa----------GC--UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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