Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13574 | 3' | -60.4 | NC_003444.1 | + | 10189 | 0.66 | 0.368595 |
Target: 5'- aGCGGCu-GCCGaguuUGCCGCaaaGaUGCAGg -3' miRNA: 3'- cCGCCGuuCGGC----AUGGCGgg-C-ACGUC- -5' |
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13574 | 3' | -60.4 | NC_003444.1 | + | 8457 | 0.66 | 0.351611 |
Target: 5'- gGGCGGUAcGGCU-UGCCGCCagcuCGUcgGCAGg -3' miRNA: 3'- -CCGCCGU-UCGGcAUGGCGG----GCA--CGUC- -5' |
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13574 | 3' | -60.4 | NC_003444.1 | + | 13849 | 0.66 | 0.351611 |
Target: 5'- aGGUGGUuucauCCGUccgcGCCGCCCGuUGuCGGg -3' miRNA: 3'- -CCGCCGuuc--GGCA----UGGCGGGC-AC-GUC- -5' |
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13574 | 3' | -60.4 | NC_003444.1 | + | 12711 | 0.66 | 0.350777 |
Target: 5'- -uUGGCAGGucaaCCGUguuuuucACCGCCgGUGCAu -3' miRNA: 3'- ccGCCGUUC----GGCA-------UGGCGGgCACGUc -5' |
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13574 | 3' | -60.4 | NC_003444.1 | + | 13742 | 0.78 | 0.051133 |
Target: 5'- cGGgGGCAGGCUGUAUUGCgCGUGCuGa -3' miRNA: 3'- -CCgCCGUUCGGCAUGGCGgGCACGuC- -5' |
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13574 | 3' | -60.4 | NC_003444.1 | + | 8401 | 1.09 | 0.00019 |
Target: 5'- uGGCGGCAAGCCGUACCGCCCGUGCAGc -3' miRNA: 3'- -CCGCCGUUCGGCAUGGCGGGCACGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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