miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13579 5' -52.4 NC_003444.1 + 8099 0.66 0.787151
Target:  5'- cGugGcGACGGg--GACCGCCGgaACGGg -3'
miRNA:   3'- -UugC-CUGUCauuUUGGUGGCggUGCC- -5'
13579 5' -52.4 NC_003444.1 + 25611 0.66 0.766154
Target:  5'- aAACaGGCAGgac-GCCcacgaaguaGCCGCCugGGg -3'
miRNA:   3'- -UUGcCUGUCauuuUGG---------UGGCGGugCC- -5'
13579 5' -52.4 NC_003444.1 + 11353 0.66 0.766153
Target:  5'- uAugGGACGGgaa---UACCGgCGCGGg -3'
miRNA:   3'- -UugCCUGUCauuuugGUGGCgGUGCC- -5'
13579 5' -52.4 NC_003444.1 + 8475 0.66 0.733555
Target:  5'- -cUGGugGGUAugcuGCCugCGCCGaagGGg -3'
miRNA:   3'- uuGCCugUCAUuu--UGGugGCGGUg--CC- -5'
13579 5' -52.4 NC_003444.1 + 13628 0.69 0.604603
Target:  5'- -cCGGAaacgacgaugauuuCGGUGAGGCCACCaccaccgcGCUGCGGg -3'
miRNA:   3'- uuGCCU--------------GUCAUUUUGGUGG--------CGGUGCC- -5'
13579 5' -52.4 NC_003444.1 + 14621 0.69 0.585086
Target:  5'- uGACGGugaACGGUAAAcgcACCugCGCCAgCGc -3'
miRNA:   3'- -UUGCC---UGUCAUUU---UGGugGCGGU-GCc -5'
13579 5' -52.4 NC_003444.1 + 14105 0.69 0.573659
Target:  5'- gGGCGGGCcguGGUGAAaaguAUCaguGCCGCCACGa -3'
miRNA:   3'- -UUGCCUG---UCAUUU----UGG---UGGCGGUGCc -5'
13579 5' -52.4 NC_003444.1 + 7371 0.7 0.550975
Target:  5'- gGGCGGuCAGUGccuGACC-CUGCCcGCGGu -3'
miRNA:   3'- -UUGCCuGUCAUu--UUGGuGGCGG-UGCC- -5'
13579 5' -52.4 NC_003444.1 + 13793 0.7 0.506514
Target:  5'- cGCGGACGGaUGAAACCACCuaUGUGGu -3'
miRNA:   3'- uUGCCUGUC-AUUUUGGUGGcgGUGCC- -5'
13579 5' -52.4 NC_003444.1 + 15020 0.71 0.474198
Target:  5'- uGGCGGACAGUGAAuuUCAgCGCC-CGa -3'
miRNA:   3'- -UUGCCUGUCAUUUu-GGUgGCGGuGCc -5'
13579 5' -52.4 NC_003444.1 + 8460 0.71 0.463657
Target:  5'- cACGGGCGGUAcgGCuUGCCGCCAgcucguCGGc -3'
miRNA:   3'- uUGCCUGUCAUuuUG-GUGGCGGU------GCC- -5'
13579 5' -52.4 NC_003444.1 + 6542 0.71 0.453238
Target:  5'- uAAUGGugAGgGAAACCGCCGCaucacCGGu -3'
miRNA:   3'- -UUGCCugUCaUUUUGGUGGCGgu---GCC- -5'
13579 5' -52.4 NC_003444.1 + 32899 0.74 0.322375
Target:  5'- gGAUGGuGCAGUcGAAAgCACCGCUugGGu -3'
miRNA:   3'- -UUGCC-UGUCA-UUUUgGUGGCGGugCC- -5'
13579 5' -52.4 NC_003444.1 + 12427 1.08 0.001509
Target:  5'- aAACGGACAGUAAAACCACCGCCACGGc -3'
miRNA:   3'- -UUGCCUGUCAUUUUGGUGGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.