miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1358 3' -58 NC_001335.1 + 46287 0.66 0.562546
Target:  5'- uGGCAcgucGUUCUGCUGaugugCUUgGCGGUGGu -3'
miRNA:   3'- gCCGU----CAAGGCGACg----GAAgCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 20633 0.66 0.55612
Target:  5'- aGGCGGgaggUcaaucgcuccaccgaCCGC-GCCgagCGCGGCGAg -3'
miRNA:   3'- gCCGUCa---A---------------GGCGaCGGaa-GCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 19434 0.66 0.551848
Target:  5'- uGGCGacUUCCGCcugcgcgGCCUggUCGCuGGCGAg -3'
miRNA:   3'- gCCGUc-AAGGCGa------CGGA--AGCG-UCGCU- -5'
1358 3' -58 NC_001335.1 + 38273 0.66 0.541213
Target:  5'- cCGGCuuAGUUCCGCUcgGCCggccaGCccGCGAc -3'
miRNA:   3'- -GCCG--UCAAGGCGA--CGGaag--CGu-CGCU- -5'
1358 3' -58 NC_001335.1 + 43732 0.66 0.520157
Target:  5'- gGGCaacguguguauuGGUUCaacugGCUGaCgCUUCGCAGCGGc -3'
miRNA:   3'- gCCG------------UCAAGg----CGAC-G-GAAGCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 14793 0.66 0.520157
Target:  5'- gGGCAGcUCaauCGC-GUCgUCGCGGCGAa -3'
miRNA:   3'- gCCGUCaAG---GCGaCGGaAGCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 32569 0.66 0.50975
Target:  5'- aGGCGcUUCCugaGCUGCCUgCGgGGCGc -3'
miRNA:   3'- gCCGUcAAGG---CGACGGAaGCgUCGCu -5'
1358 3' -58 NC_001335.1 + 32699 0.67 0.479078
Target:  5'- cCGGUGGaUCCGCgccgGCCaacgGCGGCGGc -3'
miRNA:   3'- -GCCGUCaAGGCGa---CGGaag-CGUCGCU- -5'
1358 3' -58 NC_001335.1 + 7062 0.67 0.479078
Target:  5'- gGGCcacagAGUUCCGCcaaGCagagCGCGGCGGu -3'
miRNA:   3'- gCCG-----UCAAGGCGa--CGgaa-GCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 27015 0.67 0.479078
Target:  5'- gGGUAGa-UCGCUGUgUcgcUCGCGGCGAu -3'
miRNA:   3'- gCCGUCaaGGCGACGgA---AGCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 31670 0.69 0.384171
Target:  5'- uCGGCA--UCCGCgGCCUcgUGCcAGCGGg -3'
miRNA:   3'- -GCCGUcaAGGCGaCGGAa-GCG-UCGCU- -5'
1358 3' -58 NC_001335.1 + 31761 0.69 0.375385
Target:  5'- uCGGCAGgacagcUCgCGCUGCCU-CGCGGg-- -3'
miRNA:   3'- -GCCGUCa-----AG-GCGACGGAaGCGUCgcu -5'
1358 3' -58 NC_001335.1 + 20761 0.69 0.358225
Target:  5'- aGGC-GUUCaCGCUGUCagcgUUCGCAGCc- -3'
miRNA:   3'- gCCGuCAAG-GCGACGG----AAGCGUCGcu -5'
1358 3' -58 NC_001335.1 + 34406 0.7 0.325581
Target:  5'- uGGcCAGcggcCCGCUGCCgUUCGCuGUGAu -3'
miRNA:   3'- gCC-GUCaa--GGCGACGG-AAGCGuCGCU- -5'
1358 3' -58 NC_001335.1 + 7790 0.76 0.11982
Target:  5'- aCGGCAGggaguucgcUCCGCUGCag-CGCGGUGAc -3'
miRNA:   3'- -GCCGUCa--------AGGCGACGgaaGCGUCGCU- -5'
1358 3' -58 NC_001335.1 + 17562 1.09 0.000498
Target:  5'- cCGGCAGUUCCGCUGCCUUCGCAGCGAu -3'
miRNA:   3'- -GCCGUCAAGGCGACGGAAGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.