miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13584 3' -55.3 NC_003444.1 + 343 0.66 0.597375
Target:  5'- ---cACCGCgAGGuCagucACGCACAGCAg -3'
miRNA:   3'- accaUGGCGgUCCuGa---UGUGUGUCGU- -5'
13584 3' -55.3 NC_003444.1 + 30645 0.66 0.597375
Target:  5'- gGGUGUCGCCAGuacGugUucACGCugGGCGg -3'
miRNA:   3'- aCCAUGGCGGUC---CugA--UGUGugUCGU- -5'
13584 3' -55.3 NC_003444.1 + 13313 0.66 0.56339
Target:  5'- aGGUcaGCCGUCA-GACUACGuC-CGGCAa -3'
miRNA:   3'- aCCA--UGGCGGUcCUGAUGU-GuGUCGU- -5'
13584 3' -55.3 NC_003444.1 + 15326 0.66 0.55217
Target:  5'- aGGUgACCGCCGGGAgUGuuauuCAGCGc -3'
miRNA:   3'- aCCA-UGGCGGUCCUgAUgugu-GUCGU- -5'
13584 3' -55.3 NC_003444.1 + 29824 0.67 0.529943
Target:  5'- aGGUGCUGCCuuuGGuaaucCUcCAUACAGCc -3'
miRNA:   3'- aCCAUGGCGGu--CCu----GAuGUGUGUCGu -5'
13584 3' -55.3 NC_003444.1 + 13245 0.67 0.497249
Target:  5'- cGGUAUUGCC-GGACguaguCugACGGCu -3'
miRNA:   3'- aCCAUGGCGGuCCUGau---GugUGUCGu -5'
13584 3' -55.3 NC_003444.1 + 15273 0.68 0.444916
Target:  5'- ---cGCCaGCCAGGACUcauCGCACAGg- -3'
miRNA:   3'- accaUGG-CGGUCCUGAu--GUGUGUCgu -5'
13584 3' -55.3 NC_003444.1 + 14306 0.7 0.333227
Target:  5'- cGGcgcUACCGCCugaaAGGGCUGCAgACGGg- -3'
miRNA:   3'- aCC---AUGGCGG----UCCUGAUGUgUGUCgu -5'
13584 3' -55.3 NC_003444.1 + 36116 0.71 0.308715
Target:  5'- cUGGU-CUGCCGGGcAUUAC-UACAGCAa -3'
miRNA:   3'- -ACCAuGGCGGUCC-UGAUGuGUGUCGU- -5'
13584 3' -55.3 NC_003444.1 + 14547 0.73 0.206714
Target:  5'- gUGGUGCCGCC-GGAgU-CGCACAGg- -3'
miRNA:   3'- -ACCAUGGCGGuCCUgAuGUGUGUCgu -5'
13584 3' -55.3 NC_003444.1 + 24766 1.08 0.000573
Target:  5'- cUGGUACCGCCAGGACUACACACAGCAu -3'
miRNA:   3'- -ACCAUGGCGGUCCUGAUGUGUGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.