miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13585 3' -49.5 NC_003444.1 + 7787 0.66 0.869723
Target:  5'- gGGUCGGuCUGGC-GAUAAgccucgaccauacgcGCCAGCu -3'
miRNA:   3'- aCUAGUUcGACCGaCUAUUa--------------CGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 33999 0.67 0.841488
Target:  5'- aUGggC-GGCUGGUggguguUGGUAGcaccUGCCAGCc -3'
miRNA:   3'- -ACuaGuUCGACCG------ACUAUU----ACGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 27799 0.67 0.841488
Target:  5'- cGAUCAAGgaGGCUGccAUcAUGgcuacugucCCAGCc -3'
miRNA:   3'- aCUAGUUCgaCCGAC--UAuUAC---------GGUCG- -5'
13585 3' -49.5 NC_003444.1 + 8468 0.67 0.841488
Target:  5'- cGGU-GAGCUGGUgGGUAugcUGCCuGCg -3'
miRNA:   3'- aCUAgUUCGACCGaCUAUu--ACGGuCG- -5'
13585 3' -49.5 NC_003444.1 + 21718 0.67 0.841488
Target:  5'- aUGA-CAAGCUaaaGGCUGAagcaUGGcggGUCAGCa -3'
miRNA:   3'- -ACUaGUUCGA---CCGACU----AUUa--CGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 16182 0.68 0.780031
Target:  5'- gGAUC--GCUGGCUGAccAUGCaggaccgggCGGCa -3'
miRNA:   3'- aCUAGuuCGACCGACUauUACG---------GUCG- -5'
13585 3' -49.5 NC_003444.1 + 13922 0.68 0.769068
Target:  5'- gGAUCAAagacaaucacccGCUGGUUGGgc-UGCCAcaGCg -3'
miRNA:   3'- aCUAGUU------------CGACCGACUauuACGGU--CG- -5'
13585 3' -49.5 NC_003444.1 + 8863 0.69 0.71203
Target:  5'- cGcUCAAGCUGaC-GGUAGguUGCCAGCa -3'
miRNA:   3'- aCuAGUUCGACcGaCUAUU--ACGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 8853 0.69 0.700283
Target:  5'- cUGuUUAAGCaguaccUGGUUGuggagcGUGAUGCCAGCg -3'
miRNA:   3'- -ACuAGUUCG------ACCGAC------UAUUACGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 16557 0.69 0.700282
Target:  5'- uUGGUgGcAGCUGGCaUGuUGAccUGCCAGUa -3'
miRNA:   3'- -ACUAgU-UCGACCG-ACuAUU--ACGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 20875 0.72 0.557079
Target:  5'- cUGggCAAGUUGGCUGGgucaaGCCGGa -3'
miRNA:   3'- -ACuaGUUCGACCGACUauua-CGGUCg -5'
13585 3' -49.5 NC_003444.1 + 28450 0.73 0.455037
Target:  5'- cUGAUC-AGCgauauGCUGAUAGcuggGCCAGCa -3'
miRNA:   3'- -ACUAGuUCGac---CGACUAUUa---CGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 32197 0.77 0.30236
Target:  5'- cUGAUCGcgcAGCUGGUUaucgcAGUGCCAGCa -3'
miRNA:   3'- -ACUAGU---UCGACCGAcua--UUACGGUCG- -5'
13585 3' -49.5 NC_003444.1 + 2310 0.79 0.216001
Target:  5'- -uAUCGGGCUGGCUGGUuuugGCCuGCu -3'
miRNA:   3'- acUAGUUCGACCGACUAuua-CGGuCG- -5'
13585 3' -49.5 NC_003444.1 + 28343 1.14 0.000886
Target:  5'- cUGAUCAAGCUGGCUGAUAAUGCCAGCg -3'
miRNA:   3'- -ACUAGUUCGACCGACUAUUACGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.