miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13587 3' -55.7 NC_003444.1 + 15486 0.66 0.561127
Target:  5'- -gCCGGugaauGGUCUGCCGUcUUC-CGGCg -3'
miRNA:   3'- gaGGUUu----UCGGACGGCGcAAGcGCCG- -5'
13587 3' -55.7 NC_003444.1 + 15417 0.66 0.550047
Target:  5'- -gCCGAucGCCUGCUcaaGUGcaggCGCGGUc -3'
miRNA:   3'- gaGGUUuuCGGACGG---CGCaa--GCGCCG- -5'
13587 3' -55.7 NC_003444.1 + 36814 0.67 0.528099
Target:  5'- --aCAAAGGCCUGUgucaguuaugucUGCGUgcuggUGUGGCg -3'
miRNA:   3'- gagGUUUUCGGACG------------GCGCAa----GCGCCG- -5'
13587 3' -55.7 NC_003444.1 + 10876 0.67 0.485257
Target:  5'- -gCCAAuAGCCgcaagGCCGUuagUUGCGGUc -3'
miRNA:   3'- gaGGUUuUCGGa----CGGCGca-AGCGCCG- -5'
13587 3' -55.7 NC_003444.1 + 30779 0.68 0.464462
Target:  5'- uCUCCAcuGAAGCaggUGCCGaCGUUgGUuucGGCa -3'
miRNA:   3'- -GAGGU--UUUCGg--ACGGC-GCAAgCG---CCG- -5'
13587 3' -55.7 NC_003444.1 + 7778 0.68 0.444142
Target:  5'- uUCCGGAAGCCacaGgCGCG---GCGGCa -3'
miRNA:   3'- gAGGUUUUCGGa--CgGCGCaagCGCCG- -5'
13587 3' -55.7 NC_003444.1 + 10183 0.68 0.424331
Target:  5'- -aCCGGAAGCggCUGCCGaGUUUGCcGCa -3'
miRNA:   3'- gaGGUUUUCG--GACGGCgCAAGCGcCG- -5'
13587 3' -55.7 NC_003444.1 + 13545 0.68 0.424331
Target:  5'- -aCCAAucaccAGCCUGCCGUGUgggUCGUcGUa -3'
miRNA:   3'- gaGGUUu----UCGGACGGCGCA---AGCGcCG- -5'
13587 3' -55.7 NC_003444.1 + 265 0.71 0.286565
Target:  5'- aCUCUGcggucAGGGCCUGCUguGCGUgacugaccUCGCGGUg -3'
miRNA:   3'- -GAGGU-----UUUCGGACGG--CGCA--------AGCGCCG- -5'
13587 3' -55.7 NC_003444.1 + 8380 0.75 0.176471
Target:  5'- -cCCAGAcGCCUGCCGaCGagcUgGCGGCa -3'
miRNA:   3'- gaGGUUUuCGGACGGC-GCa--AgCGCCG- -5'
13587 3' -55.7 NC_003444.1 + 36642 1.12 0.000324
Target:  5'- aCUCCAAAAGCCUGCCGCGUUCGCGGCu -3'
miRNA:   3'- -GAGGUUUUCGGACGGCGCAAGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.