miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
136 5' -61.3 AC_000006.1 + 16913 0.66 0.304475
Target:  5'- -gCCGCCGCgauuaugGGGAuGAGcGCG-GGCAGa -3'
miRNA:   3'- agGGCGGCG-------UCCU-CUC-CGUaCCGUCc -5'
136 5' -61.3 AC_000006.1 + 12367 0.67 0.25597
Target:  5'- aCCUG-CGCGGGcuguGGGGCGU-GCAGGc -3'
miRNA:   3'- aGGGCgGCGUCCu---CUCCGUAcCGUCC- -5'
136 5' -61.3 AC_000006.1 + 16801 0.67 0.249491
Target:  5'- -aCCGCCGCcGGcGGcGGGCcAUGcGCAGGc -3'
miRNA:   3'- agGGCGGCGuCC-UC-UCCG-UAC-CGUCC- -5'
136 5' -61.3 AC_000006.1 + 20333 0.67 0.236938
Target:  5'- gUCUgGCCgaugaGCGGGuAGGGGaaguUGGCGGGg -3'
miRNA:   3'- -AGGgCGG-----CGUCC-UCUCCgu--ACCGUCC- -5'
136 5' -61.3 AC_000006.1 + 16647 0.68 0.219105
Target:  5'- --gCGCaCGCGGGcgGGGGGCAgacggcGGCGGGu -3'
miRNA:   3'- aggGCG-GCGUCC--UCUCCGUa-----CCGUCC- -5'
136 5' -61.3 AC_000006.1 + 33271 0.68 0.219105
Target:  5'- -aCgGCCGCAGGAGGGGUAUaugcuguucaagGGCc-- -3'
miRNA:   3'- agGgCGGCGUCCUCUCCGUA------------CCGucc -5'
136 5' -61.3 AC_000006.1 + 8345 0.68 0.202431
Target:  5'- uUCCgGCCccGCGGGcAGGGGC--GGCAGa -3'
miRNA:   3'- -AGGgCGG--CGUCC-UCUCCGuaCCGUCc -5'
136 5' -61.3 AC_000006.1 + 4859 0.69 0.191937
Target:  5'- cCCCGCC-CAGcGAGAGGagcucuuGCAGGg -3'
miRNA:   3'- aGGGCGGcGUC-CUCUCCguac---CGUCC- -5'
136 5' -61.3 AC_000006.1 + 14679 0.69 0.186871
Target:  5'- cUCCgCGCCGCAGGuGAcGuCcgGGguGGu -3'
miRNA:   3'- -AGG-GCGGCGUCCuCUcC-GuaCCguCC- -5'
136 5' -61.3 AC_000006.1 + 8045 0.69 0.17284
Target:  5'- gCCCG-CGCGGGAGccagguccagaucucGGCGcGGCGGGg -3'
miRNA:   3'- aGGGCgGCGUCCUCu--------------CCGUaCCGUCC- -5'
136 5' -61.3 AC_000006.1 + 17591 0.7 0.158888
Target:  5'- -gCUGCCuucGguGGAGcGGGCGUGGguGGu -3'
miRNA:   3'- agGGCGG---CguCCUC-UCCGUACCguCC- -5'
136 5' -61.3 AC_000006.1 + 15549 0.72 0.101897
Target:  5'- gUCCUGCCuGCGGGGGGuGCAgUGGCGGc -3'
miRNA:   3'- -AGGGCGG-CGUCCUCUcCGU-ACCGUCc -5'
136 5' -61.3 AC_000006.1 + 16763 1.09 0.000129
Target:  5'- aUCCCGCCGCAGGAGAGGCAUGGCAGGc -3'
miRNA:   3'- -AGGGCGGCGUCCUCUCCGUACCGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.