miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13607 5' -59.5 NC_003460.1 + 2305 0.66 0.063729
Target:  5'- -cGCGgCACC-CUUCACCgcgucaCGGGCCu- -3'
miRNA:   3'- uuCGCgGUGGuGAAGUGG------GUCCGGuc -5'
13607 5' -59.5 NC_003460.1 + 255 0.66 0.063729
Target:  5'- cAGCGCCGCC-C-UUACgCCGGGCgAa -3'
miRNA:   3'- uUCGCGGUGGuGaAGUG-GGUCCGgUc -5'
13607 5' -59.5 NC_003460.1 + 1315 0.68 0.038037
Target:  5'- cAGUGCCACCgACaUCGCUCGGaGCCu- -3'
miRNA:   3'- uUCGCGGUGG-UGaAGUGGGUC-CGGuc -5'
13607 5' -59.5 NC_003460.1 + 4023 0.71 0.023381
Target:  5'- --uCGUCACCGCacgagCACCCGGGCaCAGa -3'
miRNA:   3'- uucGCGGUGGUGaa---GUGGGUCCG-GUC- -5'
13607 5' -59.5 NC_003460.1 + 213 1.07 0.000012
Target:  5'- cAAGCGCCACCACUUCACCCAGGCCAGg -3'
miRNA:   3'- -UUCGCGGUGGUGAAGUGGGUCCGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.