miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1361 3' -54.8 NC_001335.1 + 2992 0.66 0.728164
Target:  5'- gCCGuuguuCUCGGcuGCGAUgaGUUCCUgGu -3'
miRNA:   3'- -GGCu----GAGCCuuCGCUAgaCGAGGAgC- -5'
1361 3' -54.8 NC_001335.1 + 1600 0.67 0.706927
Target:  5'- gCCGaaguGCUUGGugcgguGGaCGAUCUcCUCCUCGg -3'
miRNA:   3'- -GGC----UGAGCCu-----UC-GCUAGAcGAGGAGC- -5'
1361 3' -54.8 NC_001335.1 + 20744 0.67 0.706927
Target:  5'- cCCGGagaUCGGGAGCGAgaUGC-CCaUCGc -3'
miRNA:   3'- -GGCUg--AGCCUUCGCUagACGaGG-AGC- -5'
1361 3' -54.8 NC_001335.1 + 20493 0.67 0.674558
Target:  5'- gUGAacaUCGGuGGCGAcCUGCUgaCCUCGu -3'
miRNA:   3'- gGCUg--AGCCuUCGCUaGACGA--GGAGC- -5'
1361 3' -54.8 NC_001335.1 + 39707 0.68 0.652762
Target:  5'- gCCGACUgGGAacgcuacggcaAGCGggCUGgcaUCCUCc -3'
miRNA:   3'- -GGCUGAgCCU-----------UCGCuaGACg--AGGAGc -5'
1361 3' -54.8 NC_001335.1 + 12090 0.68 0.641831
Target:  5'- uCCGACcgaggCGGAA-CGggCUGUucUCCUCGg -3'
miRNA:   3'- -GGCUGa----GCCUUcGCuaGACG--AGGAGC- -5'
1361 3' -54.8 NC_001335.1 + 24859 0.69 0.576392
Target:  5'- uCCGGCaCGGGuucucuGCGAUCaGCuugUCCUCGa -3'
miRNA:   3'- -GGCUGaGCCUu-----CGCUAGaCG---AGGAGC- -5'
1361 3' -54.8 NC_001335.1 + 29981 0.7 0.512551
Target:  5'- cCUGGucCUCGGAGaugaacuucGCGAUCaGCUCUUCGa -3'
miRNA:   3'- -GGCU--GAGCCUU---------CGCUAGaCGAGGAGC- -5'
1361 3' -54.8 NC_001335.1 + 32900 0.71 0.45181
Target:  5'- gCCGGCUCGGGcugggcaggGGCGG--UGCUCCaCGg -3'
miRNA:   3'- -GGCUGAGCCU---------UCGCUagACGAGGaGC- -5'
1361 3' -54.8 NC_001335.1 + 15331 0.72 0.432446
Target:  5'- uCCGGCUCcucguccaaGGcGGCGAUCaGCUUCUUGg -3'
miRNA:   3'- -GGCUGAG---------CCuUCGCUAGaCGAGGAGC- -5'
1361 3' -54.8 NC_001335.1 + 47194 0.75 0.261633
Target:  5'- cCCGaACUCGGGAGCGAagcccaagacuUCgucCUCCUCGc -3'
miRNA:   3'- -GGC-UGAGCCUUCGCU-----------AGac-GAGGAGC- -5'
1361 3' -54.8 NC_001335.1 + 19213 1.1 0.001065
Target:  5'- cCCGACUCGGAAGCGAUCUGCUCCUCGc -3'
miRNA:   3'- -GGCUGAGCCUUCGCUAGACGAGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.