miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1361 5' -52.4 NC_001335.1 + 1412 0.66 0.851183
Target:  5'- cGUCGAUGGCGauuGGUUguaUUCGCCGc--- -3'
miRNA:   3'- -CAGCUACUGCg--UCAA---GAGCGGCaucu -5'
1361 5' -52.4 NC_001335.1 + 13677 0.66 0.842395
Target:  5'- cGUCGGUGAUGCggguggucgAGUUCU-GCCGcgccAGAu -3'
miRNA:   3'- -CAGCUACUGCG---------UCAAGAgCGGCa---UCU- -5'
1361 5' -52.4 NC_001335.1 + 26222 0.67 0.805032
Target:  5'- -cCGA-GGCGCgGGUUCUgGCCGcgAGAc -3'
miRNA:   3'- caGCUaCUGCG-UCAAGAgCGGCa-UCU- -5'
1361 5' -52.4 NC_001335.1 + 38486 0.67 0.774988
Target:  5'- gGUCGuaacUGACuGCGGcagacggcguUUCgUCGCCGUGGAa -3'
miRNA:   3'- -CAGCu---ACUG-CGUC----------AAG-AGCGGCAUCU- -5'
1361 5' -52.4 NC_001335.1 + 1827 0.68 0.764648
Target:  5'- -aCGGUGACGCGGUcCUUGaCCGaguccuucaugUAGAg -3'
miRNA:   3'- caGCUACUGCGUCAaGAGC-GGC-----------AUCU- -5'
1361 5' -52.4 NC_001335.1 + 36561 0.68 0.743556
Target:  5'- -gCGAUGAUGCGGUUCggcaCGUCGg--- -3'
miRNA:   3'- caGCUACUGCGUCAAGa---GCGGCaucu -5'
1361 5' -52.4 NC_001335.1 + 50654 0.71 0.588064
Target:  5'- cUCGAgcGACGUAGaUCUUGCCGUcGAu -3'
miRNA:   3'- cAGCUa-CUGCGUCaAGAGCGGCAuCU- -5'
1361 5' -52.4 NC_001335.1 + 29787 0.71 0.565808
Target:  5'- cUCGAUGuggaguacuCGCGGUcgCUCGCCG-AGAa -3'
miRNA:   3'- cAGCUACu--------GCGUCAa-GAGCGGCaUCU- -5'
1361 5' -52.4 NC_001335.1 + 40464 0.72 0.532863
Target:  5'- gGUCGAUGGCGCAaacgUCUCGaCCGa--- -3'
miRNA:   3'- -CAGCUACUGCGUca--AGAGC-GGCaucu -5'
1361 5' -52.4 NC_001335.1 + 46655 0.82 0.132009
Target:  5'- cUCGAUGugGCGGggCaCGCCGUAGAc -3'
miRNA:   3'- cAGCUACugCGUCaaGaGCGGCAUCU- -5'
1361 5' -52.4 NC_001335.1 + 19176 1.09 0.001955
Target:  5'- uGUCGAUGACGCAGUUCUCGCCGUAGAu -3'
miRNA:   3'- -CAGCUACUGCGUCAAGAGCGGCAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.