miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13611 5' -59.5 NC_003460.1 + 2098 0.68 0.048255
Target:  5'- aUCAGugGACGugguugggucUGCCCUGGAcucccucgGC-GCCGg -3'
miRNA:   3'- -GGUCugCUGU----------ACGGGGCCU--------CGaCGGC- -5'
13611 5' -59.5 NC_003460.1 + 1769 0.67 0.069644
Target:  5'- uCCuu-CGGCA-GCUCCGGGGCaUGUCGu -3'
miRNA:   3'- -GGucuGCUGUaCGGGGCCUCG-ACGGC- -5'
13611 5' -59.5 NC_003460.1 + 1805 1.11 0.000009
Target:  5'- aCCAGACGACAUGCCCCGGAGCUGCCGa -3'
miRNA:   3'- -GGUCUGCUGUACGGGGCCUCGACGGC- -5'
13611 5' -59.5 NC_003460.1 + 4749 0.67 0.069644
Target:  5'- -uGGACGugcACGUGCcaCCCGGAcUUGCCGu -3'
miRNA:   3'- ggUCUGC---UGUACG--GGGCCUcGACGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.