miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13612 3' -58.1 NC_003460.1 + 5514 0.66 0.102427
Target:  5'- gCUGCUGCCAugccgugauCGUgGCCAGGugGCUGUCc -3'
miRNA:   3'- -GGCGGCGGUu--------GCA-CGGUCC--UGGUAGu -5'
13612 3' -58.1 NC_003460.1 + 2512 0.66 0.092765
Target:  5'- aCgGCgGCCAggGCG-GCCAGGGCgGcCAg -3'
miRNA:   3'- -GgCGgCGGU--UGCaCGGUCCUGgUaGU- -5'
13612 3' -58.1 NC_003460.1 + 1971 0.66 0.08681
Target:  5'- cCCGCCGCCGucccAUccGCCAGGcCCugaGUCu -3'
miRNA:   3'- -GGCGGCGGU----UGcaCGGUCCuGG---UAGu -5'
13612 3' -58.1 NC_003460.1 + 1774 0.69 0.054274
Target:  5'- aUCGCCGCCcccauGGCGaaauUGCaaAGGGCCAUCu -3'
miRNA:   3'- -GGCGGCGG-----UUGC----ACGg-UCCUGGUAGu -5'
13612 3' -58.1 NC_003460.1 + 4255 0.71 0.037347
Target:  5'- aUCGCCGUCGGCGUGUCc-GAUgGUCAg -3'
miRNA:   3'- -GGCGGCGGUUGCACGGucCUGgUAGU- -5'
13612 3' -58.1 NC_003460.1 + 3117 0.72 0.030109
Target:  5'- aCGCCGCCAggcacaccaccaggAUG-GUCAGGGCgAUCAg -3'
miRNA:   3'- gGCGGCGGU--------------UGCaCGGUCCUGgUAGU- -5'
13612 3' -58.1 NC_003460.1 + 2046 1.1 0.000014
Target:  5'- aCCGCCGCCAACGUGCCAGGACCAUCAc -3'
miRNA:   3'- -GGCGGCGGUUGCACGGUCCUGGUAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.