miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13612 5' -55.6 NC_003460.1 + 2488 0.67 0.131184
Target:  5'- -gCGGCGAUgGUggcaagGGCGgCGACGGCg -3'
miRNA:   3'- ggGCCGUUAgCGa-----CUGUgGCUGCUGa -5'
13612 5' -55.6 NC_003460.1 + 2882 0.67 0.115032
Target:  5'- gCCCGGCGgcggugAUCGCUGAuguuCGCC--UGGCUg -3'
miRNA:   3'- -GGGCCGU------UAGCGACU----GUGGcuGCUGA- -5'
13612 5' -55.6 NC_003460.1 + 473 0.67 0.115032
Target:  5'- aCCaCGGCucaacaccCGCcGAC-CCGACGACg -3'
miRNA:   3'- -GG-GCCGuua-----GCGaCUGuGGCUGCUGa -5'
13612 5' -55.6 NC_003460.1 + 229 0.68 0.097452
Target:  5'- gCCCGGCGuaagggcggCGCUGggauucaauACACCGcgcuGCGGCg -3'
miRNA:   3'- -GGGCCGUua-------GCGAC---------UGUGGC----UGCUGa -5'
13612 5' -55.6 NC_003460.1 + 1070 0.69 0.094254
Target:  5'- cCCCGGUccAUCGUcacCACUGACGACa -3'
miRNA:   3'- -GGGCCGu-UAGCGacuGUGGCUGCUGa -5'
13612 5' -55.6 NC_003460.1 + 4310 0.7 0.074509
Target:  5'- aUCCGGUccacAAggugcgccUCGCUGACcaucggacacGCCGACGGCg -3'
miRNA:   3'- -GGGCCG----UU--------AGCGACUG----------UGGCUGCUGa -5'
13612 5' -55.6 NC_003460.1 + 3274 0.71 0.058765
Target:  5'- uCCUGGCAAUCGaagcgugauCUG-CGCCGGCGGu- -3'
miRNA:   3'- -GGGCCGUUAGC---------GACuGUGGCUGCUga -5'
13612 5' -55.6 NC_003460.1 + 2012 1.1 0.000032
Target:  5'- uCCCGGCAAUCGCUGACACCGACGACUg -3'
miRNA:   3'- -GGGCCGUUAGCGACUGUGGCUGCUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.