miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13613 3' -59.5 NC_003460.1 + 523 0.66 0.075394
Target:  5'- aACAG-CcGUCCCGCCcaccaGACCGGU-CCa -3'
miRNA:   3'- gUGUCaGuCAGGGUGG-----CUGGCCGcGG- -5'
13613 3' -59.5 NC_003460.1 + 1323 0.66 0.08053
Target:  5'- aGCAGaaaCAGUgCCACCGACaucgcuCGGaGCCu -3'
miRNA:   3'- gUGUCa--GUCAgGGUGGCUG------GCCgCGG- -5'
13613 3' -59.5 NC_003460.1 + 3857 0.67 0.063891
Target:  5'- cCGCAGUCuG-CCCGCCcGCCGaaagaGCCg -3'
miRNA:   3'- -GUGUCAGuCaGGGUGGcUGGCcg---CGG- -5'
13613 3' -59.5 NC_003460.1 + 803 0.68 0.048931
Target:  5'- --uGGUCAGUUCgucuCCGAcuCCGGUGCCu -3'
miRNA:   3'- gugUCAGUCAGGgu--GGCU--GGCCGCGG- -5'
13613 3' -59.5 NC_003460.1 + 927 0.7 0.034965
Target:  5'- aACAc-CAGcaaCCCGCCGACCGGCuCCg -3'
miRNA:   3'- gUGUcaGUCa--GGGUGGCUGGCCGcGG- -5'
13613 3' -59.5 NC_003460.1 + 5590 0.75 0.013519
Target:  5'- uCACAG-CAGUCCacggaGCCGGCUGGgGCa -3'
miRNA:   3'- -GUGUCaGUCAGGg----UGGCUGGCCgCGg -5'
13613 3' -59.5 NC_003460.1 + 2166 1.11 0.000008
Target:  5'- gCACAGUCAGUCCCACCGACCGGCGCCg -3'
miRNA:   3'- -GUGUCAGUCAGGGUGGCUGGCCGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.