miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13615 3' -58.5 NC_003460.1 + 1022 0.66 0.093963
Target:  5'- cACaCGACCgaCGCCGUCAcCACCACa--- -3'
miRNA:   3'- -UG-GCUGGa-GUGGCGGU-GUGGUGcugu -5'
13615 3' -58.5 NC_003460.1 + 2552 0.67 0.079597
Target:  5'- uGCCGcCCUgGCCGcCCugGCCGCc--- -3'
miRNA:   3'- -UGGCuGGAgUGGC-GGugUGGUGcugu -5'
13615 3' -58.5 NC_003460.1 + 4724 0.67 0.074459
Target:  5'- uGCCGugCgUCACCuCCACgaaccgcaGCCAgGGCAg -3'
miRNA:   3'- -UGGCugG-AGUGGcGGUG--------UGGUgCUGU- -5'
13615 3' -58.5 NC_003460.1 + 730 0.67 0.074211
Target:  5'- gGCUGACUgaugccugucagcUCGCCGCCGuCGCCugGuCc -3'
miRNA:   3'- -UGGCUGG-------------AGUGGCGGU-GUGGugCuGu -5'
13615 3' -58.5 NC_003460.1 + 3993 0.67 0.073471
Target:  5'- cGCCGACCcccacacaccacaCACCgGCCAC-CCuCGGCAa -3'
miRNA:   3'- -UGGCUGGa------------GUGG-CGGUGuGGuGCUGU- -5'
13615 3' -58.5 NC_003460.1 + 2451 0.67 0.071531
Target:  5'- cGCCGGaucucguCCUgCACCGCCugAgacgcgcCCugGACAc -3'
miRNA:   3'- -UGGCU-------GGA-GUGGCGGugU-------GGugCUGU- -5'
13615 3' -58.5 NC_003460.1 + 615 0.68 0.054477
Target:  5'- cGCCGACgaUgauggcgggggugaCACCGCCACcaGCgGCGACAg -3'
miRNA:   3'- -UGGCUGg-A--------------GUGGCGGUG--UGgUGCUGU- -5'
13615 3' -58.5 NC_003460.1 + 694 0.69 0.051435
Target:  5'- uGCCGACgCUUgGCCGCCccaaGCACC-CGACc -3'
miRNA:   3'- -UGGCUG-GAG-UGGCGG----UGUGGuGCUGu -5'
13615 3' -58.5 NC_003460.1 + 2363 0.69 0.046466
Target:  5'- cCUGGCCcgcauccuUCACCGCCuGCACCGCcugaucGACAg -3'
miRNA:   3'- uGGCUGG--------AGUGGCGG-UGUGGUG------CUGU- -5'
13615 3' -58.5 NC_003460.1 + 2019 0.7 0.041965
Target:  5'- cCCGACCUCccggcaAUCGCUgACACCgACGACu -3'
miRNA:   3'- uGGCUGGAG------UGGCGG-UGUGG-UGCUGu -5'
13615 3' -58.5 NC_003460.1 + 1783 0.7 0.041965
Target:  5'- uGCCGAaggaUCGCCGCC-C-CCAUGGCGa -3'
miRNA:   3'- -UGGCUgg--AGUGGCGGuGuGGUGCUGU- -5'
13615 3' -58.5 NC_003460.1 + 2525 0.71 0.034678
Target:  5'- gGCCG-CCgUCGCCGCCcuugccaccaucgcCGCCACGGCu -3'
miRNA:   3'- -UGGCuGG-AGUGGCGGu-------------GUGGUGCUGu -5'
13615 3' -58.5 NC_003460.1 + 2792 1.08 1.9e-05
Target:  5'- aACCGACCUCACCGCCACACCACGACAg -3'
miRNA:   3'- -UGGCUGGAGUGGCGGUGUGGUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.