Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13616 | 5' | -55.2 | NC_003460.1 | + | 3137 | 0.66 | 0.151394 |
|
Target: 5'- uAugAUCCGGAuugaCACCGAcgccGCCAGGcACa- -3' miRNA: 3'- -UugUAGGCCU----GUGGCU----CGGUCU-UGcg -5' |
|||||||
| 13616 | 5' | -55.2 | NC_003460.1 | + | 2896 | 0.66 | 0.137116 |
|
Target: 5'- cGCcgCCGGGCACauCGAGagAGAucgACGCa -3' miRNA: 3'- uUGuaGGCCUGUG--GCUCggUCU---UGCG- -5' |
|||||||
| 13616 | 5' | -55.2 | NC_003460.1 | + | 5138 | 0.68 | 0.103835 |
|
Target: 5'- cGACGaCCGGACGagaacucuucccacUCGuGCCAG-ACGCg -3' miRNA: 3'- -UUGUaGGCCUGU--------------GGCuCGGUCuUGCG- -5' |
|||||||
| 13616 | 5' | -55.2 | NC_003460.1 | + | 3472 | 0.69 | 0.085549 |
|
Target: 5'- gGGCAUCCGGAcCACCuuGCCGcccauccgcuguGggUGCc -3' miRNA: 3'- -UUGUAGGCCU-GUGGcuCGGU------------CuuGCG- -5' |
|||||||
| 13616 | 5' | -55.2 | NC_003460.1 | + | 3492 | 0.73 | 0.041353 |
|
Target: 5'- gGugGUCCGGAUGCCcAGgCAGAuCGCa -3' miRNA: 3'- -UugUAGGCCUGUGGcUCgGUCUuGCG- -5' |
|||||||
| 13616 | 5' | -55.2 | NC_003460.1 | + | 2862 | 1.1 | 2.6e-05 |
|
Target: 5'- cAACAUCCGGACACCGAGCCAGAACGCa -3' miRNA: 3'- -UUGUAGGCCUGUGGCUCGGUCUUGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home