miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13618 5' -53.1 NC_003460.1 + 3581 1.13 2.7e-05
Target:  5'- gGUCACCUCAUCCAGCAGAAUGUCCCCa -3'
miRNA:   3'- -CAGUGGAGUAGGUCGUCUUACAGGGG- -5'
13618 5' -53.1 NC_003460.1 + 2385 0.68 0.142273
Target:  5'- gGUgACCggAUCguGCAGggUGUCCa- -3'
miRNA:   3'- -CAgUGGagUAGguCGUCuuACAGGgg -5'
13618 5' -53.1 NC_003460.1 + 2964 0.67 0.15212
Target:  5'- aUgGCCUgGUCCc---GGAUGUCCCCg -3'
miRNA:   3'- cAgUGGAgUAGGucguCUUACAGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.