miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13619 5' -61.5 NC_003460.1 + 3740 0.74 0.00891
Target:  5'- gGGCgAUgucgaagACCCUGCCuGGCAGGGUgUg -3'
miRNA:   3'- -CCGgUG-------UGGGACGGuCCGUCCCAgAa -5'
13619 5' -61.5 NC_003460.1 + 5683 0.7 0.01783
Target:  5'- aGGCC-CGCC--GCCAGGCGGGuGUCc- -3'
miRNA:   3'- -CCGGuGUGGgaCGGUCCGUCC-CAGaa -5'
13619 5' -61.5 NC_003460.1 + 2351 0.68 0.027863
Target:  5'- gGGCCaggGCAUuuUGUCGGgauuGCAGGGUCUg -3'
miRNA:   3'- -CCGG---UGUGggACGGUC----CGUCCCAGAa -5'
13619 5' -61.5 NC_003460.1 + 3782 1.06 0.000009
Target:  5'- gGGCCACACCCUGCCAGGCAGGGUCUUc -3'
miRNA:   3'- -CCGGUGUGGGACGGUCCGUCCCAGAA- -5'
13619 5' -61.5 NC_003460.1 + 2238 0.66 0.040562
Target:  5'- uGGUCAUugCCcugGCCAuGCAGGGcCUc -3'
miRNA:   3'- -CCGGUGugGGa--CGGUcCGUCCCaGAa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.