miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1362 3' -54.1 NC_001335.1 + 32159 0.65 0.798498
Target:  5'- gGCC-CGCGAACucggccaGCUCGUCGGcAUCGa- -3'
miRNA:   3'- -CGGaGUGCUUG-------CGAGCAGUC-UGGUga -5'
1362 3' -54.1 NC_001335.1 + 31110 0.66 0.769603
Target:  5'- cGCCUUGcCGAACaGCUCGUUcugcGuCCGCUg -3'
miRNA:   3'- -CGGAGU-GCUUG-CGAGCAGu---CuGGUGA- -5'
1362 3' -54.1 NC_001335.1 + 11723 0.66 0.769603
Target:  5'- cGCCUuCGCGAugGCGUUCGaCAacGCCGCg -3'
miRNA:   3'- -CGGA-GUGCU--UGCGAGCaGUc-UGGUGa -5'
1362 3' -54.1 NC_001335.1 + 29313 0.66 0.758312
Target:  5'- aGCUUCGCGuccuggcGGCGCU-GUCGggcGACCGCa -3'
miRNA:   3'- -CGGAGUGC-------UUGCGAgCAGU---CUGGUGa -5'
1362 3' -54.1 NC_001335.1 + 2213 0.66 0.748955
Target:  5'- uUCUCugcgACGAACGCcCGagGGGCCACc -3'
miRNA:   3'- cGGAG----UGCUUGCGaGCagUCUGGUGa -5'
1362 3' -54.1 NC_001335.1 + 45331 0.67 0.71064
Target:  5'- aCCUCGagGAguacaucaaggcuacGgGUUCGUCGGGCCGCUg -3'
miRNA:   3'- cGGAGUg-CU---------------UgCGAGCAGUCUGGUGA- -5'
1362 3' -54.1 NC_001335.1 + 4846 0.68 0.684499
Target:  5'- gGCCUUGcCGAucaagccggugAUGCUCGUCGGGCUccaGCa -3'
miRNA:   3'- -CGGAGU-GCU-----------UGCGAGCAGUCUGG---UGa -5'
1362 3' -54.1 NC_001335.1 + 29047 0.68 0.662485
Target:  5'- cGCCUCAUGAAcuCGCUUGgccaCAGGgaucgagauccCCACUg -3'
miRNA:   3'- -CGGAGUGCUU--GCGAGCa---GUCU-----------GGUGA- -5'
1362 3' -54.1 NC_001335.1 + 12073 0.68 0.640357
Target:  5'- cGCCUCGgGcACGgUCGUCGG-CUACc -3'
miRNA:   3'- -CGGAGUgCuUGCgAGCAGUCuGGUGa -5'
1362 3' -54.1 NC_001335.1 + 9317 0.69 0.618197
Target:  5'- aCUUCACcaacGCGCUCGaUCAGAUCGCc -3'
miRNA:   3'- cGGAGUGcu--UGCGAGC-AGUCUGGUGa -5'
1362 3' -54.1 NC_001335.1 + 27212 0.69 0.618197
Target:  5'- cGCCUgugagggcggCACGG--GUUCGUCGGACUACa -3'
miRNA:   3'- -CGGA----------GUGCUugCGAGCAGUCUGGUGa -5'
1362 3' -54.1 NC_001335.1 + 10876 0.69 0.603815
Target:  5'- gGCCUCugGggUGCUCucgggagugggguuGUCGGACa--- -3'
miRNA:   3'- -CGGAGugCuuGCGAG--------------CAGUCUGguga -5'
1362 3' -54.1 NC_001335.1 + 2135 0.7 0.563175
Target:  5'- gGCCcCuCGGGCGUUCGUCGcagagaacGGCCACg -3'
miRNA:   3'- -CGGaGuGCUUGCGAGCAGU--------CUGGUGa -5'
1362 3' -54.1 NC_001335.1 + 46759 0.7 0.541502
Target:  5'- aGCCUCACGGGCGgUCaG-CGGAuCUACg -3'
miRNA:   3'- -CGGAGUGCUUGCgAG-CaGUCU-GGUGa -5'
1362 3' -54.1 NC_001335.1 + 39794 0.7 0.530769
Target:  5'- gGCgCUCGCG-GCGCugacgacaUCG-CAGACCGCUg -3'
miRNA:   3'- -CG-GAGUGCuUGCG--------AGCaGUCUGGUGA- -5'
1362 3' -54.1 NC_001335.1 + 5899 0.73 0.391224
Target:  5'- -gCUCAUGGACGCcagacggugUCGUCAG-CCACg -3'
miRNA:   3'- cgGAGUGCUUGCG---------AGCAGUCuGGUGa -5'
1362 3' -54.1 NC_001335.1 + 19327 0.76 0.257257
Target:  5'- gGUCUgACGAGCGUUCGUgAGGCCGa- -3'
miRNA:   3'- -CGGAgUGCUUGCGAGCAgUCUGGUga -5'
1362 3' -54.1 NC_001335.1 + 19401 1.09 0.001313
Target:  5'- gGCCUCACGAACGCUCGUCAGACCACUc -3'
miRNA:   3'- -CGGAGUGCUUGCGAGCAGUCUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.