miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13625 5' -56.1 NC_003460.1 + 2513 0.74 0.02292
Target:  5'- cGgcGGCCAGGgcGGCCaggGCgGCCAGGGCg -3'
miRNA:   3'- aCuuCCGGUUC--UCGG---CGgUGGUUCUG- -5'
13625 5' -56.1 NC_003460.1 + 5670 0.71 0.040366
Target:  5'- aGggGuGCgCGGGAGgcCCGCCGCCA-GGCg -3'
miRNA:   3'- aCuuC-CG-GUUCUC--GGCGGUGGUuCUG- -5'
13625 5' -56.1 NC_003460.1 + 2931 0.67 0.092992
Target:  5'- cGAAGGCCuggacGGGGCUGUUGgCGAGGg -3'
miRNA:   3'- aCUUCCGGu----UCUCGGCGGUgGUUCUg -5'
13625 5' -56.1 NC_003460.1 + 693 0.66 0.11796
Target:  5'- cGcuGGCUcuGGGUCGUCGCCucGACg -3'
miRNA:   3'- aCuuCCGGuuCUCGGCGGUGGuuCUG- -5'
13625 5' -56.1 NC_003460.1 + 5379 1.09 2.2e-05
Target:  5'- uUGAAGGCCAAGAGCCGCCACCAAGACc -3'
miRNA:   3'- -ACUUCCGGUUCUCGGCGGUGGUUCUG- -5'
13625 5' -56.1 NC_003460.1 + 607 0.68 0.075659
Target:  5'- aUGAuGGCgGGGGugacaCCGCCACCAGcGGCg -3'
miRNA:   3'- -ACUuCCGgUUCUc----GGCGGUGGUU-CUG- -5'
13625 5' -56.1 NC_003460.1 + 3021 0.68 0.081062
Target:  5'- -cGAGGCCAccgaucccgcuAGAGaCGCCAUCGGGgACa -3'
miRNA:   3'- acUUCCGGU-----------UCUCgGCGGUGGUUC-UG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.