miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1367 3' -61.9 NC_001335.1 + 16203 0.66 0.384666
Target:  5'- cGGcauCGUGGccggucUGCUGGCCGGUcUGCCGu -3'
miRNA:   3'- -UCu--GCACC------ACGGCCGGUCGaGCGGCu -5'
1367 3' -61.9 NC_001335.1 + 15332 0.66 0.384666
Target:  5'- gAGACGcaacUGGgggaaGCCGcGCC--CUCGCCGAg -3'
miRNA:   3'- -UCUGC----ACCa----CGGC-CGGucGAGCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 21385 0.66 0.343249
Target:  5'- uGACGUGGauguUGCCGuccucaucaCCAGCUC-CCGGa -3'
miRNA:   3'- uCUGCACC----ACGGCc--------GGUCGAGcGGCU- -5'
1367 3' -61.9 NC_001335.1 + 25924 0.67 0.335361
Target:  5'- --cCGUuG-GCCGcaGCCAGCUCGCUGAg -3'
miRNA:   3'- ucuGCAcCaCGGC--CGGUCGAGCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 43276 0.67 0.327607
Target:  5'- cGGACGcGGaUGCCGuCCAGCUCGauguugaaCGGa -3'
miRNA:   3'- -UCUGCaCC-ACGGCcGGUCGAGCg-------GCU- -5'
1367 3' -61.9 NC_001335.1 + 9385 0.67 0.319985
Target:  5'- cGGCGcguUGGUgaaGuuGGCCAGCUCgGCUGc -3'
miRNA:   3'- uCUGC---ACCA---CggCCGGUCGAG-CGGCu -5'
1367 3' -61.9 NC_001335.1 + 49000 0.67 0.297924
Target:  5'- cGGCGUGGcGUgGGCaaagaaAGUcuUCGCCGAg -3'
miRNA:   3'- uCUGCACCaCGgCCGg-----UCG--AGCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 5686 0.67 0.297924
Target:  5'- aGGGCGUcgagcaGGUGCucgCGGCCAGgCagagUGCCGAg -3'
miRNA:   3'- -UCUGCA------CCACG---GCCGGUC-Ga---GCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 29008 0.68 0.257378
Target:  5'- cGGCG-GcUGCCGGUggaCAGCUCGCgGAc -3'
miRNA:   3'- uCUGCaCcACGGCCG---GUCGAGCGgCU- -5'
1367 3' -61.9 NC_001335.1 + 29785 0.69 0.238855
Target:  5'- cGAUGUGGaGUacucgCGGUC-GCUCGCCGAg -3'
miRNA:   3'- uCUGCACCaCG-----GCCGGuCGAGCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 7580 0.7 0.210472
Target:  5'- gAGACcggGGUGUCGGCCGGCgcuuccagcgCGUCGu -3'
miRNA:   3'- -UCUGca-CCACGGCCGGUCGa---------GCGGCu -5'
1367 3' -61.9 NC_001335.1 + 48369 0.7 0.199956
Target:  5'- aGGGUGUGGUucgGCCGGCCGGC-CGCg-- -3'
miRNA:   3'- -UCUGCACCA---CGGCCGGUCGaGCGgcu -5'
1367 3' -61.9 NC_001335.1 + 13000 0.7 0.189901
Target:  5'- gGGGCGcGGUGUCGGUC-GCUCGCg-- -3'
miRNA:   3'- -UCUGCaCCACGGCCGGuCGAGCGgcu -5'
1367 3' -61.9 NC_001335.1 + 1834 0.73 0.124383
Target:  5'- cGGCGUGGggcUGUgGGCCAGCcUGUCGAa -3'
miRNA:   3'- uCUGCACC---ACGgCCGGUCGaGCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 32860 0.75 0.082383
Target:  5'- cGAUGgGGUGUCGGCCacguucaAGUUCGCCGGu -3'
miRNA:   3'- uCUGCaCCACGGCCGG-------UCGAGCGGCU- -5'
1367 3' -61.9 NC_001335.1 + 22591 1.08 0.000264
Target:  5'- cAGACGUGGUGCCGGCCAGCUCGCCGAu -3'
miRNA:   3'- -UCUGCACCACGGCCGGUCGAGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.