miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1368 5' -50.9 NC_001335.1 + 11854 0.66 0.909698
Target:  5'- uUGGUgGUCUgcgcuaggaaGGUCGGgAACGGGcUGu -3'
miRNA:   3'- -ACUAgCAGAa---------CCAGCUgUUGCCCuAC- -5'
1368 5' -50.9 NC_001335.1 + 37530 0.67 0.856077
Target:  5'- gGAUCGgCUugugGGUgucagugaCGACGACGGGAa- -3'
miRNA:   3'- aCUAGCaGAa---CCA--------GCUGUUGCCCUac -5'
1368 5' -50.9 NC_001335.1 + 7730 0.7 0.748843
Target:  5'- gUGAUCGgguUCUUGGUCGACAGaauCGacuuGAUGa -3'
miRNA:   3'- -ACUAGC---AGAACCAGCUGUU---GCc---CUAC- -5'
1368 5' -50.9 NC_001335.1 + 29927 0.7 0.705243
Target:  5'- uUGGUCGUCUUGuGUCGGCGGCu----- -3'
miRNA:   3'- -ACUAGCAGAAC-CAGCUGUUGcccuac -5'
1368 5' -50.9 NC_001335.1 + 31886 0.77 0.348802
Target:  5'- aGGUCGUCUcGGUCGu---CGGGGUGg -3'
miRNA:   3'- aCUAGCAGAaCCAGCuguuGCCCUAC- -5'
1368 5' -50.9 NC_001335.1 + 23892 1.09 0.003016
Target:  5'- gUGAUCGUCUUGGUCGACAACGGGAUGu -3'
miRNA:   3'- -ACUAGCAGAACCAGCUGUUGCCCUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.