Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1369 | 3' | -55.8 | NC_001335.1 | + | 24677 | 1.1 | 0.000638 |
Target: 5'- cGUUGGCAACGCCAAGACCGUCCGGUCg -3' miRNA: 3'- -CAACCGUUGCGGUUCUGGCAGGCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 24495 | 0.75 | 0.195576 |
Target: 5'- -gUGGCuACGCCAAGAUCGgucggCCGGa- -3' miRNA: 3'- caACCGuUGCGGUUCUGGCa----GGCCag -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 2468 | 0.73 | 0.268131 |
Target: 5'- aGUUGGCAGCaGaaAGGACCGggagCCGGUa -3' miRNA: 3'- -CAACCGUUG-CggUUCUGGCa---GGCCAg -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 1225 | 0.7 | 0.396458 |
Target: 5'- --cGGCAGCGCCGGuACCGgaggcgucaCCGGUg -3' miRNA: 3'- caaCCGUUGCGGUUcUGGCa--------GGCCAg -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 9851 | 0.7 | 0.396458 |
Target: 5'- --gGGCucggggaGCCuGGGACCGUCgGGUCg -3' miRNA: 3'- caaCCGuug----CGG-UUCUGGCAGgCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 24089 | 0.7 | 0.434164 |
Target: 5'- -cUGGCGGCGgCGGGGCUGgugCCcaGGUCu -3' miRNA: 3'- caACCGUUGCgGUUCUGGCa--GG--CCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 14752 | 0.7 | 0.443911 |
Target: 5'- -cUGGCuGCGCU--GcCCGUCCGGUUc -3' miRNA: 3'- caACCGuUGCGGuuCuGGCAGGCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 9088 | 0.7 | 0.443912 |
Target: 5'- --cGGCAcaacgggaacgACGCCcAGACCGUgCGGg- -3' miRNA: 3'- caaCCGU-----------UGCGGuUCUGGCAgGCCag -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 38350 | 0.69 | 0.453781 |
Target: 5'- -cUGGCcg-GCCGAGcggaacuaaGCCGUUCGGUCu -3' miRNA: 3'- caACCGuugCGGUUC---------UGGCAGGCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 15895 | 0.69 | 0.453781 |
Target: 5'- --gGGCGAUGUCGAGAUCaa-CGGUCa -3' miRNA: 3'- caaCCGUUGCGGUUCUGGcagGCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 16651 | 0.69 | 0.453781 |
Target: 5'- cGUUGGaCAGCGUCAGGAacgccugCGUgCCGGUa -3' miRNA: 3'- -CAACC-GUUGCGGUUCUg------GCA-GGCCAg -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 41682 | 0.69 | 0.463768 |
Target: 5'- -gUGGggauCGACGCCuGGGGCCGgCUGGUCu -3' miRNA: 3'- caACC----GUUGCGG-UUCUGGCaGGCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 11895 | 0.69 | 0.473869 |
Target: 5'- cGUUGGa---GCCGGuGCCGUCCGGg- -3' miRNA: 3'- -CAACCguugCGGUUcUGGCAGGCCag -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 24415 | 0.68 | 0.525909 |
Target: 5'- --gGuGCGACGaCCAAGGagcugauggcCCGUCuCGGUCa -3' miRNA: 3'- caaC-CGUUGC-GGUUCU----------GGCAG-GCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 8600 | 0.68 | 0.558151 |
Target: 5'- --cGGUGACGCCGAuGGCC-UCUGGcCg -3' miRNA: 3'- caaCCGUUGCGGUU-CUGGcAGGCCaG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 39787 | 0.68 | 0.558151 |
Target: 5'- -gUGGcCAACGCUucccAGACCGUggugCGGUCc -3' miRNA: 3'- caACC-GUUGCGGu---UCUGGCAg---GCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 29341 | 0.67 | 0.579956 |
Target: 5'- --cGGCAGCGUCugcGCCGggaugCCGGUg -3' miRNA: 3'- caaCCGUUGCGGuucUGGCa----GGCCAg -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 5970 | 0.67 | 0.590928 |
Target: 5'- --cGGCAGCGgCGuucccgauuGGCCGU-CGGUCg -3' miRNA: 3'- caaCCGUUGCgGUu--------CUGGCAgGCCAG- -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 16372 | 0.67 | 0.598631 |
Target: 5'- --gGGCAGCGUCGAGgcggcugccuugauGCCGUCCa--- -3' miRNA: 3'- caaCCGUUGCGGUUC--------------UGGCAGGccag -5' |
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1369 | 3' | -55.8 | NC_001335.1 | + | 26672 | 0.67 | 0.612969 |
Target: 5'- --cGGCcg-GCuCAAGGCCGUUCGGcUCg -3' miRNA: 3'- caaCCGuugCG-GUUCUGGCAGGCC-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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