miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
137 3' -59.6 AC_000006.1 + 15405 0.66 0.382964
Target:  5'- cCCGCCgGCUCUUGcgucuggcauaucGCC-GCCgcgucgCCACCAc -3'
miRNA:   3'- -GGCGG-UGGGAAC-------------UGGaCGGa-----GGUGGU- -5'
137 3' -59.6 AC_000006.1 + 15416 0.66 0.34914
Target:  5'- gCGCCGCCCgaGcUCUGCUgcgCCgcGCCAg -3'
miRNA:   3'- gGCGGUGGGaaCuGGACGGa--GG--UGGU- -5'
137 3' -59.6 AC_000006.1 + 16365 0.66 0.340817
Target:  5'- aCCG--ACCCcUGGCUcccaGCCUCCACCGc -3'
miRNA:   3'- -GGCggUGGGaACUGGa---CGGAGGUGGU- -5'
137 3' -59.6 AC_000006.1 + 16878 0.67 0.332639
Target:  5'- gCCGCCACUCagGcGCCUGCgCauggcccgCCGCCGg -3'
miRNA:   3'- -GGCGGUGGGaaC-UGGACG-Ga-------GGUGGU- -5'
137 3' -59.6 AC_000006.1 + 33534 0.67 0.324605
Target:  5'- gCUGUCACCUgcgUGACUUGCaCUUUAUCGu -3'
miRNA:   3'- -GGCGGUGGGa--ACUGGACG-GAGGUGGU- -5'
137 3' -59.6 AC_000006.1 + 11046 0.67 0.324605
Target:  5'- gCCGUCACCaggUUGGCC-GCCgCCACg- -3'
miRNA:   3'- -GGCGGUGGg--AACUGGaCGGaGGUGgu -5'
137 3' -59.6 AC_000006.1 + 1992 0.67 0.316717
Target:  5'- cCCGCUGCC--UGACCcaUGcCCUCCACa- -3'
miRNA:   3'- -GGCGGUGGgaACUGG--AC-GGAGGUGgu -5'
137 3' -59.6 AC_000006.1 + 8118 0.68 0.279451
Target:  5'- cCCGCCGCgCCgagaucugGACCUGgCUCCcGCgCGg -3'
miRNA:   3'- -GGCGGUG-GGaa------CUGGACgGAGG-UG-GU- -5'
137 3' -59.6 AC_000006.1 + 19586 0.68 0.27243
Target:  5'- aCGCCACCUUcuuccccaUGgcgcacaacACC-GCCUCCACCc -3'
miRNA:   3'- gGCGGUGGGA--------AC---------UGGaCGGAGGUGGu -5'
137 3' -59.6 AC_000006.1 + 10040 0.68 0.27243
Target:  5'- gCCgGCCACCCagcgcUGGCC-GCuCUaCCGCCAg -3'
miRNA:   3'- -GG-CGGUGGGa----ACUGGaCG-GA-GGUGGU- -5'
137 3' -59.6 AC_000006.1 + 9713 0.7 0.188501
Target:  5'- -gGUCACCCgcauggaaGACUccGCCUCCGCCAg -3'
miRNA:   3'- ggCGGUGGGaa------CUGGa-CGGAGGUGGU- -5'
137 3' -59.6 AC_000006.1 + 24045 0.71 0.173764
Target:  5'- aCCGUCGCCUcgGACCUGgccgagaucguCCUCCcCCGa -3'
miRNA:   3'- -GGCGGUGGGaaCUGGAC-----------GGAGGuGGU- -5'
137 3' -59.6 AC_000006.1 + 17295 0.71 0.173764
Target:  5'- cCCGUUaauGCCCgaGGCCagGCCgUCCACCAc -3'
miRNA:   3'- -GGCGG---UGGGaaCUGGa-CGG-AGGUGGU- -5'
137 3' -59.6 AC_000006.1 + 16575 0.72 0.143314
Target:  5'- aCCGCCACCCgccGCCgucUGCCccCCGCCc -3'
miRNA:   3'- -GGCGGUGGGaacUGG---ACGGa-GGUGGu -5'
137 3' -59.6 AC_000006.1 + 8424 0.72 0.139384
Target:  5'- gCGCCACgCC--GACgUGCCUCUGCCGc -3'
miRNA:   3'- gGCGGUG-GGaaCUGgACGGAGGUGGU- -5'
137 3' -59.6 AC_000006.1 + 17505 1.09 0.000191
Target:  5'- cCCGCCACCCUUGACCUGCCUCCACCAc -3'
miRNA:   3'- -GGCGGUGGGAACUGGACGGAGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.