Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
137 | 5' | -56.3 | AC_000006.1 | + | 17369 | 0.66 | 0.523454 |
Target: 5'- aCCACCGuGGGCGGCcgCgGGUccagacgGCu -3' miRNA: 3'- aGGUGGCuUCCGUCGa-GgCCAaca----CG- -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 24929 | 0.66 | 0.523454 |
Target: 5'- aCCGCCGGGcuGCGGCg-CGGaugGUGCg -3' miRNA: 3'- aGGUGGCUUc-CGUCGagGCCaa-CACG- -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 378 | 0.66 | 0.512642 |
Target: 5'- uUCCGCCcuGGGCGGgaCCGGUa---- -3' miRNA: 3'- -AGGUGGcuUCCGUCgaGGCCAacacg -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 16849 | 0.67 | 0.449932 |
Target: 5'- gCCGCCGgcGGCGGUUCaGGccGcUGCc -3' miRNA: 3'- aGGUGGCuuCCGUCGAGgCCaaC-ACG- -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 4252 | 0.69 | 0.364456 |
Target: 5'- cCCGCCGggGGU---UCauGUUGUGCa -3' miRNA: 3'- aGGUGGCuuCCGucgAGgcCAACACG- -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 20818 | 0.69 | 0.364456 |
Target: 5'- uUCCAgCCGAAGGCgAGCcagugcacgccUCCGGUcucGCg -3' miRNA: 3'- -AGGU-GGCUUCCG-UCG-----------AGGCCAacaCG- -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 17618 | 0.7 | 0.314043 |
Target: 5'- gCCACCGGAGGgGGCUgcacaaCCGGagcUGCc -3' miRNA: 3'- aGGUGGCUUCCgUCGA------GGCCaacACG- -5' |
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137 | 5' | -56.3 | AC_000006.1 | + | 17542 | 1.12 | 0.000236 |
Target: 5'- cUCCACCGAAGGCAGCUCCGGUUGUGCa -3' miRNA: 3'- -AGGUGGCUUCCGUCGAGGCCAACACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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