miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
137 5' -56.3 AC_000006.1 + 17369 0.66 0.523454
Target:  5'- aCCACCGuGGGCGGCcgCgGGUccagacgGCu -3'
miRNA:   3'- aGGUGGCuUCCGUCGa-GgCCAaca----CG- -5'
137 5' -56.3 AC_000006.1 + 24929 0.66 0.523454
Target:  5'- aCCGCCGGGcuGCGGCg-CGGaugGUGCg -3'
miRNA:   3'- aGGUGGCUUc-CGUCGagGCCaa-CACG- -5'
137 5' -56.3 AC_000006.1 + 378 0.66 0.512642
Target:  5'- uUCCGCCcuGGGCGGgaCCGGUa---- -3'
miRNA:   3'- -AGGUGGcuUCCGUCgaGGCCAacacg -5'
137 5' -56.3 AC_000006.1 + 16849 0.67 0.449932
Target:  5'- gCCGCCGgcGGCGGUUCaGGccGcUGCc -3'
miRNA:   3'- aGGUGGCuuCCGUCGAGgCCaaC-ACG- -5'
137 5' -56.3 AC_000006.1 + 4252 0.69 0.364456
Target:  5'- cCCGCCGggGGU---UCauGUUGUGCa -3'
miRNA:   3'- aGGUGGCuuCCGucgAGgcCAACACG- -5'
137 5' -56.3 AC_000006.1 + 20818 0.69 0.364456
Target:  5'- uUCCAgCCGAAGGCgAGCcagugcacgccUCCGGUcucGCg -3'
miRNA:   3'- -AGGU-GGCUUCCG-UCG-----------AGGCCAacaCG- -5'
137 5' -56.3 AC_000006.1 + 17618 0.7 0.314043
Target:  5'- gCCACCGGAGGgGGCUgcacaaCCGGagcUGCc -3'
miRNA:   3'- aGGUGGCUUCCgUCGA------GGCCaacACG- -5'
137 5' -56.3 AC_000006.1 + 17542 1.12 0.000236
Target:  5'- cUCCACCGAAGGCAGCUCCGGUUGUGCa -3'
miRNA:   3'- -AGGUGGCUUCCGUCGAGGCCAACACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.