miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1370 3' -56 NC_001335.1 + 17020 0.67 0.594133
Target:  5'- cGAGcGUGcuCGCCAGCgUCUGGaaggccgGCGUGa -3'
miRNA:   3'- -CUC-UACu-GCGGUCG-AGACCa------CGCACg -5'
1370 3' -56 NC_001335.1 + 8600 0.67 0.583119
Target:  5'- -cGGUGACGCCgauGGcCUCUGGccgGCGcucaGCg -3'
miRNA:   3'- cuCUACUGCGG---UC-GAGACCa--CGCa---CG- -5'
1370 3' -56 NC_001335.1 + 43256 0.69 0.436576
Target:  5'- cGGGUGACGacuuCCAGCUCg---GCGUGUa -3'
miRNA:   3'- cUCUACUGC----GGUCGAGaccaCGCACG- -5'
1370 3' -56 NC_001335.1 + 17322 0.7 0.417342
Target:  5'- ---cUGGCGCaGGCUCUGGUcaGCGUuGCu -3'
miRNA:   3'- cucuACUGCGgUCGAGACCA--CGCA-CG- -5'
1370 3' -56 NC_001335.1 + 17633 0.73 0.255905
Target:  5'- gGAGcUGGCGuCCAGCguggCUGGUGCaGUGa -3'
miRNA:   3'- -CUCuACUGC-GGUCGa---GACCACG-CACg -5'
1370 3' -56 NC_001335.1 + 42701 0.74 0.24229
Target:  5'- cGGGAUGACGCaCGGcCUCcgcuUGGgcaaaccUGCGUGCa -3'
miRNA:   3'- -CUCUACUGCG-GUC-GAG----ACC-------ACGCACG- -5'
1370 3' -56 NC_001335.1 + 25055 1.12 0.000414
Target:  5'- aGAGAUGACGCCAGCUCUGGUGCGUGCg -3'
miRNA:   3'- -CUCUACUGCGGUCGAGACCACGCACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.