miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1371 3' -55.8 NC_001335.1 + 17449 0.66 0.701456
Target:  5'- gCGCCGaugagCGCGCcgccGAuGGAG-ACACCCa -3'
miRNA:   3'- -GCGGUa----GUGCGac--CU-CCUCaUGUGGG- -5'
1371 3' -55.8 NC_001335.1 + 27110 0.66 0.690669
Target:  5'- -aCCGggACGCUGGGGGuGUAguCCg -3'
miRNA:   3'- gcGGUagUGCGACCUCCuCAUguGGg -5'
1371 3' -55.8 NC_001335.1 + 25545 0.66 0.679825
Target:  5'- uCGCCcgCucCGCUGGucagaGGGuGUuuuCGCCCu -3'
miRNA:   3'- -GCGGuaGu-GCGACC-----UCCuCAu--GUGGG- -5'
1371 3' -55.8 NC_001335.1 + 29179 0.66 0.679825
Target:  5'- gGUCAUCugG-UGGAGGuccGCACCg -3'
miRNA:   3'- gCGGUAGugCgACCUCCucaUGUGGg -5'
1371 3' -55.8 NC_001335.1 + 7231 0.66 0.658014
Target:  5'- aGCCc-CGCGUcgaUGGAGG-GUAacCGCCCg -3'
miRNA:   3'- gCGGuaGUGCG---ACCUCCuCAU--GUGGG- -5'
1371 3' -55.8 NC_001335.1 + 22313 0.67 0.636107
Target:  5'- gGCCGUCgaucaACGuCUGGGGGAucuCGCCg -3'
miRNA:   3'- gCGGUAG-----UGC-GACCUCCUcauGUGGg -5'
1371 3' -55.8 NC_001335.1 + 36740 0.67 0.614185
Target:  5'- uCGCCccgGCGCUGGucGAGUACgucaGCUCg -3'
miRNA:   3'- -GCGGuagUGCGACCucCUCAUG----UGGG- -5'
1371 3' -55.8 NC_001335.1 + 32719 0.68 0.538401
Target:  5'- gGCCAgCACGUcGGccGGGUccGCACCCu -3'
miRNA:   3'- gCGGUaGUGCGaCCucCUCA--UGUGGG- -5'
1371 3' -55.8 NC_001335.1 + 34299 0.68 0.526747
Target:  5'- aCGCCAUCGCucaguguguugugGCcGGcGGuGUGCGCCg -3'
miRNA:   3'- -GCGGUAGUG-------------CGaCCuCCuCAUGUGGg -5'
1371 3' -55.8 NC_001335.1 + 50192 0.69 0.517283
Target:  5'- gGCCGUCGCGUccgGGcAGGAGaa-GCCUu -3'
miRNA:   3'- gCGGUAGUGCGa--CC-UCCUCaugUGGG- -5'
1371 3' -55.8 NC_001335.1 + 20408 0.7 0.460098
Target:  5'- uGCUAUCGgGCUGGugcccaugaaccaggGGGAGUAgUACUCg -3'
miRNA:   3'- gCGGUAGUgCGACC---------------UCCUCAU-GUGGG- -5'
1371 3' -55.8 NC_001335.1 + 44313 0.71 0.390048
Target:  5'- uGUCGUCugGCcacgaccaGAGGAGUuCACCCu -3'
miRNA:   3'- gCGGUAGugCGac------CUCCUCAuGUGGG- -5'
1371 3' -55.8 NC_001335.1 + 18075 0.71 0.368873
Target:  5'- uGCgGUCACGCUGGuAGGAcaggauguccuucUGCGCCUg -3'
miRNA:   3'- gCGgUAGUGCGACC-UCCUc------------AUGUGGG- -5'
1371 3' -55.8 NC_001335.1 + 9239 0.72 0.3552
Target:  5'- uGCCGaagaUCagGCGCUGGGGGA---CACCCa -3'
miRNA:   3'- gCGGU----AG--UGCGACCUCCUcauGUGGG- -5'
1371 3' -55.8 NC_001335.1 + 12943 0.73 0.307163
Target:  5'- cCGCCAU-GCGCUucuGGGAGUugACCCc -3'
miRNA:   3'- -GCGGUAgUGCGAcc-UCCUCAugUGGG- -5'
1371 3' -55.8 NC_001335.1 + 37779 0.73 0.292293
Target:  5'- aCGCUGuUCGCGCcGGucacGGuGUACACCCg -3'
miRNA:   3'- -GCGGU-AGUGCGaCCu---CCuCAUGUGGG- -5'
1371 3' -55.8 NC_001335.1 + 25185 1.13 0.000491
Target:  5'- gCGCCAUCACGCUGGAGGAGUACACCCg -3'
miRNA:   3'- -GCGGUAGUGCGACCUCCUCAUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.