miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1371 5' -60.1 NC_001335.1 + 2700 0.66 0.449963
Target:  5'- gGUGGAGCGgGcACCUggcccgcuuaucgaCGCccaGGAUGGCGu -3'
miRNA:   3'- -CACCUCGCgC-UGGA--------------GCG---UCUGCCGUg -5'
1371 5' -60.1 NC_001335.1 + 1465 0.66 0.44325
Target:  5'- uUGcuuGCGCuuGGCCUCGCgcuucucaucGGugGGCGCg -3'
miRNA:   3'- cACcu-CGCG--CUGGAGCG----------UCugCCGUG- -5'
1371 5' -60.1 NC_001335.1 + 47639 0.66 0.43376
Target:  5'- cUGGAGC-CGAgCCUcggucucggCGUAGugGGCAg -3'
miRNA:   3'- cACCUCGcGCU-GGA---------GCGUCugCCGUg -5'
1371 5' -60.1 NC_001335.1 + 29167 0.66 0.433759
Target:  5'- gGUGGGGCGaaGGCuCUCGCuGA-GGCAg -3'
miRNA:   3'- -CACCUCGCg-CUG-GAGCGuCUgCCGUg -5'
1371 5' -60.1 NC_001335.1 + 28838 0.66 0.424388
Target:  5'- -cGGGGUGUauccGGCCUCGUGGA-GGCGa -3'
miRNA:   3'- caCCUCGCG----CUGGAGCGUCUgCCGUg -5'
1371 5' -60.1 NC_001335.1 + 8345 0.66 0.415138
Target:  5'- cUGGAGUccuucGUGACCUUGCGaaucgcGAUGGCGu -3'
miRNA:   3'- cACCUCG-----CGCUGGAGCGU------CUGCCGUg -5'
1371 5' -60.1 NC_001335.1 + 9692 0.66 0.406014
Target:  5'- -aGGAGCGCGAagagaugCGCcGAUGGgACg -3'
miRNA:   3'- caCCUCGCGCUgga----GCGuCUGCCgUG- -5'
1371 5' -60.1 NC_001335.1 + 39310 0.67 0.397016
Target:  5'- -aGGAcGCGCGugC-CGaGGGCGGCGa -3'
miRNA:   3'- caCCU-CGCGCugGaGCgUCUGCCGUg -5'
1371 5' -60.1 NC_001335.1 + 6311 0.67 0.397016
Target:  5'- -aGGucCGCGACUacgCGCAcGACGGCGa -3'
miRNA:   3'- caCCucGCGCUGGa--GCGU-CUGCCGUg -5'
1371 5' -60.1 NC_001335.1 + 36568 0.67 0.377679
Target:  5'- gGUGGAGauccagccuggaGCGAUCUUGUAGAacucaGGCAg -3'
miRNA:   3'- -CACCUCg-----------CGCUGGAGCGUCUg----CCGUg -5'
1371 5' -60.1 NC_001335.1 + 51810 0.67 0.369952
Target:  5'- -gGGAcuguccaGCGUGACCa-GCGGauaGCGGCACg -3'
miRNA:   3'- caCCU-------CGCGCUGGagCGUC---UGCCGUG- -5'
1371 5' -60.1 NC_001335.1 + 31766 0.67 0.362336
Target:  5'- -aGGAcagcucGCGCuGCCUCGCGGgccugcuugcGCGGCAa -3'
miRNA:   3'- caCCU------CGCGcUGGAGCGUC----------UGCCGUg -5'
1371 5' -60.1 NC_001335.1 + 6874 0.68 0.33774
Target:  5'- -gGaGAGCGCGAUCaacgUCGcCAGACGGUuCg -3'
miRNA:   3'- caC-CUCGCGCUGG----AGC-GUCUGCCGuG- -5'
1371 5' -60.1 NC_001335.1 + 20559 0.68 0.314383
Target:  5'- gGUGGAGCGauuGACCUCccGCcucuGGGCGGUcuGCu -3'
miRNA:   3'- -CACCUCGCg--CUGGAG--CG----UCUGCCG--UG- -5'
1371 5' -60.1 NC_001335.1 + 51890 0.73 0.141224
Target:  5'- -cGGGGCGaCGACCaCGaCAG-CGGCACg -3'
miRNA:   3'- caCCUCGC-GCUGGaGC-GUCuGCCGUG- -5'
1371 5' -60.1 NC_001335.1 + 25148 1.08 0.000344
Target:  5'- cGUGGAGCGCGACCUCGCAGACGGCACc -3'
miRNA:   3'- -CACCUCGCGCUGGAGCGUCUGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.