miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1372 3' -59.6 NC_001335.1 + 14834 0.66 0.455315
Target:  5'- aCGUGCccGAgGUUCCCGAGGGCugAUCCc -3'
miRNA:   3'- -GCGCGa-CUaCGGGGGCUCUCG--UAGGu -5'
1372 3' -59.6 NC_001335.1 + 36798 0.67 0.408193
Target:  5'- cCG-GUUGGUGUCCaCGAGGGCAaCCAc -3'
miRNA:   3'- -GCgCGACUACGGGgGCUCUCGUaGGU- -5'
1372 3' -59.6 NC_001335.1 + 9141 0.67 0.398241
Target:  5'- gGCGUgaucucacUGGUGCCguacaggUCCGAGAGCcggGUCCGg -3'
miRNA:   3'- gCGCG--------ACUACGG-------GGGCUCUCG---UAGGU- -5'
1372 3' -59.6 NC_001335.1 + 26669 0.67 0.390216
Target:  5'- aGCGgUcuccuggaugGAUGCUCUCGGGGGCAUCa- -3'
miRNA:   3'- gCGCgA----------CUACGGGGGCUCUCGUAGgu -5'
1372 3' -59.6 NC_001335.1 + 51054 0.68 0.339485
Target:  5'- uCGgGUUacUGCCCgCGAGAGCGUCa- -3'
miRNA:   3'- -GCgCGAcuACGGGgGCUCUCGUAGgu -5'
1372 3' -59.6 NC_001335.1 + 22490 0.68 0.331509
Target:  5'- cCGuCGCUGA-GCCCgCCGAGcGUAUCg- -3'
miRNA:   3'- -GC-GCGACUaCGGG-GGCUCuCGUAGgu -5'
1372 3' -59.6 NC_001335.1 + 30687 0.69 0.315973
Target:  5'- gGCGCUGAagaagcUGCCCCCaaAGGGCuuggucagCCAc -3'
miRNA:   3'- gCGCGACU------ACGGGGGc-UCUCGua------GGU- -5'
1372 3' -59.6 NC_001335.1 + 33551 0.69 0.300259
Target:  5'- gGCGaaGAUGCCaggagucUCCGAGGGgAUCCAc -3'
miRNA:   3'- gCGCgaCUACGG-------GGGCUCUCgUAGGU- -5'
1372 3' -59.6 NC_001335.1 + 3124 0.7 0.246566
Target:  5'- --aGCUGAUGguCCCCCGAGGGguUUCu -3'
miRNA:   3'- gcgCGACUAC--GGGGGCUCUCguAGGu -5'
1372 3' -59.6 NC_001335.1 + 1140 0.7 0.240367
Target:  5'- gGCGCUGGaGCCCCCGGaucGGGCGg--- -3'
miRNA:   3'- gCGCGACUaCGGGGGCU---CUCGUaggu -5'
1372 3' -59.6 NC_001335.1 + 18155 0.73 0.168391
Target:  5'- aGCGgaGAUggguucaucucgaagGCCaucaCCGAGGGCAUCCAg -3'
miRNA:   3'- gCGCgaCUA---------------CGGg---GGCUCUCGUAGGU- -5'
1372 3' -59.6 NC_001335.1 + 35702 0.73 0.166598
Target:  5'- aGCGgcucCUGAUcgccucugcauaGCCCCCGuucuGAGCGUCCAg -3'
miRNA:   3'- gCGC----GACUA------------CGGGGGCu---CUCGUAGGU- -5'
1372 3' -59.6 NC_001335.1 + 26760 1.08 0.000382
Target:  5'- cCGCGCUGAUGCCCCCGAGAGCAUCCAu -3'
miRNA:   3'- -GCGCGACUACGGGGGCUCUCGUAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.