Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 17909 | 0.66 | 0.936348 |
|
Target: 5'- cAAGGUCGAGAAGAacgguaUCC-CCaaGGGAg-- -3' miRNA: 3'- -UUCCAGUUCUUUU------AGGaGG--CCCUauu -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 15820 | 0.67 | 0.904219 |
|
Target: 5'- cAAGGUCAgcccgaacaccaAGGAGuUCCgCCGGGAa-- -3' miRNA: 3'- -UUCCAGU------------UCUUUuAGGaGGCCCUauu -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 39297 | 0.67 | 0.88917 |
|
Target: 5'- cGAGGgCGGcGAAGAggUCUCCGGGGUAc -3' miRNA: 3'- -UUCCaGUU-CUUUUa-GGAGGCCCUAUu -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 14971 | 0.68 | 0.864352 |
|
Target: 5'- cAGGcccgcCAAGGAAAccucccCCUCCGGGGUAGa -3' miRNA: 3'- uUCCa----GUUCUUUUa-----GGAGGCCCUAUU- -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 37307 | 0.68 | 0.855511 |
|
Target: 5'- cAGGaUCAucauGAcggccacGUCCUCCGGGGUGAa -3' miRNA: 3'- uUCC-AGUu---CUuu-----UAGGAGGCCCUAUU- -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 22425 | 0.68 | 0.8464 |
|
Target: 5'- cAGGUCgAAGAuccGGUcgaucagcucccCCUCCGGGGUGAu -3' miRNA: 3'- uUCCAG-UUCUu--UUA------------GGAGGCCCUAUU- -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 6166 | 0.72 | 0.662163 |
|
Target: 5'- -cGGcUCAGGAAGgucAUCUUCUGGGGUAAu -3' miRNA: 3'- uuCC-AGUUCUUU---UAGGAGGCCCUAUU- -5' |
|||||||
| 1373 | 3' | -49.1 | NC_001335.1 | + | 26985 | 1.04 | 0.006344 |
|
Target: 5'- cAAGGUCAAGAAAAUCCUCCGGGAUAAa -3' miRNA: 3'- -UUCCAGUUCUUUUAGGAGGCCCUAUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home